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28 Open 69 Closed
28 Open 69 Closed
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Issues list

Not possible to monitor analyses in Trailblazer Effort S Effort small Enhancement New feature or request Gain S Gain small
#179 opened Dec 18, 2024 by beatrizsavinhas
Commands for updating gms-artic version in README Effort S Effort small Enhancement New feature or request Gain S Gain small
#173 opened Feb 7, 2024 by talnor
Fix installation Effort S Effort small Enhancement New feature or request Gain S Gain small
#172 opened Feb 7, 2024 by talnor
Cutoff iVar Effort S Effort small Enhancement New feature or request Gain S Gain small
#170 opened Nov 13, 2023 by sofstam
3 of 6 tasks
HOTFIX
1
More nextclade columns Effort S Effort small Enhancement New feature or request Gain S Gain small
#169 opened Oct 5, 2023 by talnor HOTFIX
Fix add-to-bl.yml action Effort S Effort small Enhancement New feature or request Gain S Gain small
#168 opened Sep 21, 2023 by talnor
Store pangolin versions used in analysis Effort S Effort small Enhancement New feature or request Gain S Gain small
#167 opened Sep 20, 2023 by talnor
Add short summary of what the pipeline tool does Effort S Effort small Enhancement New feature or request Gain S Gain small
#166 opened Sep 7, 2023 by samuell
1
Disable the automatic use of latest gms-artic containers Effort M Effort medium Gain S Gain small Urgency S Urgency small
#162 opened Dec 16, 2022 by pbiology Release 5
2
Update output files to include nextclade information Effort S Effort small Enhancement New feature or request Gain S Gain small KS confirmation needed
#161 opened Oct 19, 2022 by pbiology HOTFIX
@karlnyr
4
Set QC_PASS to FALSE if negative controls has QC_PASS=TRUE Effort S Effort small Enhancement New feature or request Gain S Gain small
#160 opened Oct 12, 2022 by moahaegglund Release 5
Update README for GMS containers Effort S Effort small Enhancement New feature or request Gain S Gain small
#145 opened May 17, 2022 by talnor Release 5
Update CG project ID in case config Effort S Effort small Gain S Gain small
#134 opened Feb 18, 2022 by talnor TBD
Variable slurm priorities for jobs CG Upgrades Effort S Effort small Gain S Gain small
#130 opened Feb 7, 2022 by talnor Release 5
Need support for insertions and deletions? Effort S Effort small Enhancement New feature or request Gain S Gain small
#121 opened Nov 29, 2021 by talnor Release 6
Automate VOC updates Effort S Effort small Enhancement New feature or request Gain M Gain medium
#118 opened Nov 23, 2021 by talnor Release 6
@sofstam
3
Mutation T484I in orf1ab gene reported Bug Something isn't working KS Upgrades
#112 opened Oct 29, 2021 by sofstam Release 5
1
Add automatic blacking Effort S Effort small Enhancement New feature or request Gain S Gain small
#105 opened Sep 8, 2021 by talnor Release 5
1
Add unit tests Effort S Effort small Enhancement New feature or request Gain S Gain small
#104 opened Sep 8, 2021 by talnor Release 5
Check for contamination in samples Effort M Effort medium Enhancement New feature or request Gain S Gain small KS Upgrades
#100 opened Aug 23, 2021 by talnor Release 6
KS consensus file variation Effort S Effort small Enhancement New feature or request Gain S Gain small
#90 opened Jun 10, 2021 by sylvinite TBD
2
Write check that GMS-Artic images are present Effort S Effort small Enhancement New feature or request Gain S Gain small
#69 opened Apr 26, 2021 by sylvinite TBD
Plop everything into an image Effort M Effort medium Enhancement New feature or request Gain M Gain medium
#64 opened Apr 21, 2021 by sylvinite TBD
Installing & running mutant yields "mutant.assets not found" Bug Something isn't working Effort S Effort small Gain S Gain small
#52 opened Apr 6, 2021 by sylvinite TBD
Handle insufficent resources for samtools mpileup Bug Something isn't working Effort S Effort small Gain S Gain small
#50 opened Apr 6, 2021 by sylvinite TBD
2
ProTip! What’s not been updated in a month: updated:<2024-12-15.