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Automate VOC updates #118

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talnor opened this issue Nov 23, 2021 · 3 comments
Open

Automate VOC updates #118

talnor opened this issue Nov 23, 2021 · 3 comments
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Effort S Effort small Enhancement New feature or request Gain M Gain medium
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@talnor
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talnor commented Nov 23, 2021

What needs to be done:
VOCs and spike mutations should always reflect the latest definitions by ECDC.

Definitions are available here:

Suggestions on how to get it done:
TBD. Small parsing script written already. Can we run it in github actions maybe?

What are the arguments for getting it done:

Task is considered finished when:

  • VOCs and spike mutations are updated on a regular basis automatically.
@talnor talnor added Effort S Effort small Enhancement New feature or request Gain S Gain small labels Nov 23, 2021
@talnor talnor assigned talnor and unassigned talnor Nov 23, 2021
@sofstam
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sofstam commented Nov 24, 2021

@talnor good idea! We can test to run the parsing script with a cron job and gh action

@henrikstranneheim
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@sofstam We are trying to move away from cron jobs and use systemd services instead. See, https://atlas.scilifelab.se/infrastructure/development/development/#systemd, http://systemd.io/ and https://en.wikipedia.org/wiki/Systemd

@sofstam
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sofstam commented Nov 24, 2021

@henrikstranneheim Thank you for the clarification :)

@sofstam sofstam self-assigned this Nov 26, 2021
@talnor talnor added Gain M Gain medium and removed Gain S Gain small labels Nov 29, 2021
@pbiology pbiology added this to the Release 6 milestone Jun 29, 2023
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