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44 Open 108 Closed
44 Open 108 Closed
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Issues list

Add variant splice data models (e.g., SpliceAI scores) enhancement
#202 opened Jul 6, 2021 by jtarraga
@jtarraga
Improve the mutational signature data model enhancement
#201 opened May 26, 2021 by jtarraga
@jtarraga
Calculate and add VAF during variant normalisation enhancement
#195 opened Jan 11, 2021 by imedina v2.1.0
@j-coll
Do not decompose multiallelic Spanning Deletions when normalizing enhancement
#194 opened Nov 6, 2020 by j-coll v2.0.0
@j-coll
Modify VariantType enum enhancement
#193 opened Nov 5, 2020 by j-coll v2.0.0
@j-coll
Add VariantNormalizerExtensions enhancement
#191 opened Sep 23, 2020 by j-coll v2.0.0
@imedina @j-coll
Implement new clinical objects enhancement
#189 opened Aug 31, 2020 by jtarraga
@jtarraga
Consolidate quality control stats task
#187 opened Jun 23, 2020 by imedina
@jtarraga @imedina
Data model for the alignment stats enhancement
#184 opened Apr 29, 2020 by jtarraga v2.0.0
@jtarraga
VariantSetStats and SampleVariantStats model changes
#182 opened Apr 17, 2020 by j-coll v2.0.0
@j-coll
avro/Cytoband and core/Cytoband - do we need both? question
#180 opened Mar 19, 2020 by julie-sullivan v2.0.0
@imedina
1
StudyEntry model changes enhancement
#179 opened Mar 18, 2020 by j-coll
7 tasks done
v2.0.0
@j-coll
Add list of "IssueEntry" to StudyEntry enhancement
#177 opened Mar 5, 2020 by j-coll v2.0.0
@j-coll
Store VCF ID value as a FileEntry attribute enhancement
#176 opened Feb 14, 2020 by j-coll v2.0.0
@j-coll
1
Add FilterCount and QualityAverage to VariantStats enhancement
#174 opened Feb 10, 2020 by j-coll v2.0.0
@j-coll
Replace Pair with alternative class question
#172 opened Oct 10, 2019 by julie-sullivan v2.0.0
2
Generate missing reference blocks with missing genotypes enhancement
#170 opened Sep 30, 2019 by j-coll
@j-coll
Refactor reported variant creators (for clinical interpretations) enhancement
#169 opened Jun 19, 2019 by jtarraga
@jtarraga
Implement variant sample stats enhancement task
#164 opened Dec 11, 2018 by jtarraga
15 tasks done
v1.4.0
@jtarraga
Implement IBD algorithm enhancement task
#163 opened Dec 11, 2018 by jtarraga v1.4.0
@jtarraga
Support symbolic alternate <*> and <NON_REF> as NO_VARIATION enhancement
#162 opened Aug 31, 2018 by j-coll
4 tasks done
v1.4.0
@j-coll
Remove deprecated and old code task
#157 opened Feb 12, 2018 by imedina v1.4.0
@imedina
Implement parsing of aggregated frequencies as provided by DiscovEHR enhancement
#144 opened Mar 1, 2017 by javild Under consideration
@j-coll
Improve Variant model documentation task
#136 opened Dec 7, 2016 by j-coll
Merge: Collapse INDELs enhancement
#134 opened Dec 6, 2016 by mh11
@mh11
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