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Add list of "IssueEntry" to StudyEntry #177

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j-coll opened this issue Mar 5, 2020 · 0 comments
Open

Add list of "IssueEntry" to StudyEntry #177

j-coll opened this issue Mar 5, 2020 · 0 comments
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j-coll commented Mar 5, 2020

There are some events in a Variants Dataset that can be considered issues, like duplications, discrepancies, mendelian errors... Adding a list of issues at StudyEntry level could help to report them to end-users.

Proposed data model

class SampleEntry {
    union { null, string } sampleId;   // optional
    Integer                fileIndex;
    array<string>          data;  (see #179) 
}

enum IssueType {
    DUPLICATION,
    DISCREPANCY,
    MENDELIAN_ERROR,
    DE_NOVO
}

class IssueEntry {
    IssueType              type;
    SampleEntry            sample;
}

class StudyEntry {
    ...
    array<IssueEntry>      issues;
    ....
}
@j-coll j-coll added this to the v2.0.0 milestone Mar 5, 2020
@j-coll j-coll self-assigned this Mar 5, 2020
@j-coll j-coll changed the title Add list of "SampleIssues" to StudyEntry Add list of "IssueEntry" to StudyEntry Mar 5, 2020
@j-coll j-coll mentioned this issue Mar 20, 2020
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