IGV Biopython Lab

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Meg Staton edited this page Oct 7, 2016 · 6 revisions

Goals

To use a genome browser to visualize a reference genome, mapped reads, variants and annotation
To use biopython to do basic sequence manipulations

Concepts to know

When looking at a sequece viewer, how to identify a SNP, an indel or a read error
The basic tasks that can be down with biopython
IUPAC code - what is it and why is it useful?
Basic parts of open source licenses
Copy left license vs permissive license vs public domain

Materials

K-mer experiment - How'd we do? What k-mer is the best?

HW

HW6 - Due Wednesday, October 12th