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update package lifecycle to maturing #30

Merged
merged 20 commits into from
Jul 20, 2023
Merged

update package lifecycle to maturing #30

merged 20 commits into from
Jul 20, 2023

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GeraldineGomez
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GeraldineGomez and others added 20 commits February 1, 2023 14:24
* dengue-example

* adding single color for fill

---------

Co-authored-by: zmcucunuba <[email protected]>
* dengue-example

* adding single color for fill

* modify conditional for var_fill

---------

Co-authored-by: zmcucunuba <[email protected]>
* dengue-example

* adding single color for fill

* modify conditional for var_fill

* modify conditional for var_fill

* modify conditional for var_fill

* modify dengue-example

---------

Co-authored-by: zmcucunuba <[email protected]>
* dengue-example

* adding single color for fill

* modify conditional for var_fill

* modify conditional for var_fill

* modify conditional for var_fill

* modify dengue-example

* modify text size and color of plot by variable

---------

Co-authored-by: zmcucunuba <[email protected]>
)

* dengue-example

* adding single color for fill

* adecuación de la función plt by variable

* modificaciones del ejemplo

* últimos cambios a la función plot by variable

* Texto del reporte automatizado

* automating cases total and modify graphs

* commit para hacer pull

* Automatización, corrección de gráficas y numeraciónb

* automation porcentage age cases and correction graphs

* automation porcentage age cases and correction graphs

* Automatización del porcentaje

* add porcentage symbol

---------

Co-authored-by: zmcucunuba <[email protected]>
Co-authored-by: megamezl <[email protected]>
* dengue-example

* adding single color for fill

* adecuación de la función plt by variable

* modificaciones del ejemplo

* últimos cambios a la función plot by variable

* Texto del reporte automatizado

* automating cases total and modify graphs

* commit para hacer pull

* Automatización, corrección de gráficas y numeraciónb

* automation porcentage age cases and correction graphs

* automation porcentage age cases and correction graphs

* Automatización del porcentaje

* add porcentage symbol

---------

Co-authored-by: zmcucunuba <[email protected]>
Co-authored-by: megamezl <[email protected]>
…ion (#32)

* modify dengue-example (#22)

* adding conditional for single color in plot by variable (#20)

* dengue-example

* adding single color for fill

---------

Co-authored-by: zmcucunuba <[email protected]>

* modify conditional of var_fill (#21)

* dengue-example

* adding single color for fill

* modify conditional for var_fill

---------

Co-authored-by: zmcucunuba <[email protected]>

---------

Co-authored-by: zmcucunuba <[email protected]>

* creating the package website

* create initial sections of the basic report, cleaning and util functions, updating dengue example

* creating function documentation on report_sections, clean_data and utils

* fix param functions of get cases distributions by age and gender

* adding plot titles and new gender and epiweek section

* updatind documentation functions

* fix plot function section by gender and epiweek

* adding documentation new function of special population

* adding new function of special population to basic report

* adding spacial distribution section and utils

* update documentation functions of spacial distribution section and utils

* updating spacial distribution function

* updating documentation functions of distribution spatial

* updating spatial distribution function

* standarization variables and creating clean general function

* modify clean sivigila data function and create general functionto clean depto codes

* create documentation of new clean functions

* refactoring functions of onset and notification date sections

* creating documentation function of notification data and onsent symp

* modify general clean data function

* modify clean sivigila data

* creating components of gender and epiweek section

* creating components of age and gender, special population section

* creating components of age and gender, special population section

* creating components of spacial distribution section

* fixing variables components of special population and gender

* fixing caption text sixe and breaks

* removing message plot map

* fixing caption text sixe and breaks

* fixing caption text size

* fixing caption text size and map

* fixing title distribution age and week, and percentage cases by age

* fixing percentage cases by age

* creating skeleton template of basic report

* updating template package

* adding params to report basic skeleton

* updating the documentation functions of the clean data module

* fix: documentation of functions

* clean: data, functions and files

* clean: list disease and ReadMe file

* remve: title map

* remove day of label

* renaming functions and variables

* updating documentation functions

* renaming function names and refactoring the vignettes content

* renaming function names, refactoring the vignettes content and updating documentation

* updating documentation and titles plots

* updating documentation list_available_diseases_years

* fix: documentation functions, vignettes, ReadMe and Dengue Example

* fixing general documentation

* fix images ReadMe file

* fix: ReadMe file and vignettess

* remove some dependencies and functions deprecated

* Adding tips to ReadMe and Vignettes

* updating size images

* updating size images ReadMe

* adding space ReadMe file

* updating align left images

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* fix: style images ReadMe and Vignettes

* fix: style images Vignettes

* fix: echo ReadMe

* fix: some variables and typo in ReadMe

* fixing ReadMe and Vignettes, updating website

* adding dependencie map and scale y for plot variable function

* fix> scale y for plot variable function

* improving group functions

* updationg plot map function and dependencies

* updationg plot map function and dependencies

* updationg examples and documentation

* updating examples and documentation

* fix: function examples

* remove files

* fix examples and lintr of modules

* fix message plot

* divide map plot

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* export functions to departments and municipalities and examples

* fix general syntax and rename functions of municipalities

* fix called of function geo ocurrence

* update template Reporte Basico

* preview basic report

* add function clean cols by exceptions

* adding diseases like input choice on skeleton

* modify forma exceptios cols disease in config file

* adding analysis of notification department and municipality

* update: functions on ReadMe file

* update: version and README files

---------

Co-authored-by: zmcucunuba <[email protected]>
* creating the package website

* create initial sections of the basic report, cleaning and util functions, updating dengue example

* creating function documentation on report_sections, clean_data and utils

* fix param functions of get cases distributions by age and gender

* adding plot titles and new gender and epiweek section

* updatind documentation functions

* fix plot function section by gender and epiweek

* adding documentation new function of special population

* adding new function of special population to basic report

* adding spacial distribution section and utils

* update documentation functions of spacial distribution section and utils

* updating spacial distribution function

* updating documentation functions of distribution spatial

* updating spatial distribution function

* standarization variables and creating clean general function

* modify clean sivigila data function and create general functionto clean depto codes

* create documentation of new clean functions

* refactoring functions of onset and notification date sections

* creating documentation function of notification data and onsent symp

* modify general clean data function

* modify clean sivigila data

* creating components of gender and epiweek section

* creating components of age and gender, special population section

* creating components of age and gender, special population section

* creating components of spacial distribution section

* fixing variables components of special population and gender

* fixing caption text sixe and breaks

* removing message plot map

* fixing caption text sixe and breaks

* fixing caption text size

* fixing caption text size and map

* fixing title distribution age and week, and percentage cases by age

* fixing percentage cases by age

* creating skeleton template of basic report

* updating template package

* adding params to report basic skeleton

* updating the documentation functions of the clean data module

* fix: documentation of functions

* clean: data, functions and files

* clean: list disease and ReadMe file

* remve: title map

* remove day of label

* renaming functions and variables

* updating documentation functions

* renaming function names and refactoring the vignettes content

* renaming function names, refactoring the vignettes content and updating documentation

* updating documentation and titles plots

* updating documentation list_available_diseases_years

* fix: documentation functions, vignettes, ReadMe and Dengue Example

* fixing general documentation

* fix images ReadMe file

* fix: ReadMe file and vignettess

* remove some dependencies and functions deprecated

* Adding tips to ReadMe and Vignettes

* updating size images

* updating size images ReadMe

* adding space ReadMe file

* updating align left images

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* fix: style images ReadMe and Vignettes

* fix: style images Vignettes

* fix: echo ReadMe

* fix: some variables and typo in ReadMe

* fixing ReadMe and Vignettes, updating website

* adding dependencie map and scale y for plot variable function

* fix> scale y for plot variable function

* improving group functions

* updationg plot map function and dependencies

* updationg plot map function and dependencies

* updationg examples and documentation

* updating examples and documentation

* fix: function examples

* remove files

* fix examples and lintr of modules

* fix message plot

* divide map plot

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* export functions to departments and municipalities and examples

* fix general syntax and rename functions of municipalities

* fix called of function geo ocurrence

* update template Reporte Basico

* preview basic report

* add function clean cols by exceptions

* adding diseases like input choice on skeleton

* modify forma exceptios cols disease in config file

* adding analysis of notification department and municipality

* update: functions on ReadMe file

* update: version and README files

* fix: typo, identation of code
* creating the package website

* create initial sections of the basic report, cleaning and util functions, updating dengue example

* creating function documentation on report_sections, clean_data and utils

* fix param functions of get cases distributions by age and gender

* adding plot titles and new gender and epiweek section

* updatind documentation functions

* fix plot function section by gender and epiweek

* adding documentation new function of special population

* adding new function of special population to basic report

* adding spacial distribution section and utils

* update documentation functions of spacial distribution section and utils

* updating spacial distribution function

* updating documentation functions of distribution spatial

* updating spatial distribution function

* standarization variables and creating clean general function

* modify clean sivigila data function and create general functionto clean depto codes

* create documentation of new clean functions

* refactoring functions of onset and notification date sections

* creating documentation function of notification data and onsent symp

* modify general clean data function

* modify clean sivigila data

* creating components of gender and epiweek section

* creating components of age and gender, special population section

* creating components of age and gender, special population section

* creating components of spacial distribution section

* fixing variables components of special population and gender

* fixing caption text sixe and breaks

* removing message plot map

* fixing caption text sixe and breaks

* fixing caption text size

* fixing caption text size and map

* fixing title distribution age and week, and percentage cases by age

* fixing percentage cases by age

* creating skeleton template of basic report

* updating template package

* adding params to report basic skeleton

* updating the documentation functions of the clean data module

* fix: documentation of functions

* clean: data, functions and files

* clean: list disease and ReadMe file

* remve: title map

* remove day of label

* renaming functions and variables

* updating documentation functions

* renaming function names and refactoring the vignettes content

* renaming function names, refactoring the vignettes content and updating documentation

* updating documentation and titles plots

* updating documentation list_available_diseases_years

* fix: documentation functions, vignettes, ReadMe and Dengue Example

* fixing general documentation

* fix images ReadMe file

* fix: ReadMe file and vignettess

* remove some dependencies and functions deprecated

* Adding tips to ReadMe and Vignettes

* updating size images

* updating size images ReadMe

* adding space ReadMe file

* updating align left images

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* fix: style images ReadMe and Vignettes

* fix: style images Vignettes

* fix: echo ReadMe

* fix: some variables and typo in ReadMe

* fixing ReadMe and Vignettes, updating website

* adding dependencie map and scale y for plot variable function

* fix> scale y for plot variable function

* improving group functions

* updationg plot map function and dependencies

* updationg plot map function and dependencies

* updationg examples and documentation

* updating examples and documentation

* fix: function examples

* remove files

* fix examples and lintr of modules

* fix message plot

* divide map plot

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* export functions to departments and municipalities and examples

* fix general syntax and rename functions of municipalities

* fix called of function geo ocurrence

* update template Reporte Basico

* preview basic report

* add function clean cols by exceptions

* adding diseases like input choice on skeleton

* modify forma exceptios cols disease in config file

* adding analysis of notification department and municipality

* update: functions on ReadMe file

* update: version and README files

* fix: typo, identation of code

* update: functions and documentation of subnational report
* creating the package website

* create initial sections of the basic report, cleaning and util functions, updating dengue example

* creating function documentation on report_sections, clean_data and utils

* fix param functions of get cases distributions by age and gender

* adding plot titles and new gender and epiweek section

* updatind documentation functions

* fix plot function section by gender and epiweek

* adding documentation new function of special population

* adding new function of special population to basic report

* adding spacial distribution section and utils

* update documentation functions of spacial distribution section and utils

* updating spacial distribution function

* updating documentation functions of distribution spatial

* updating spatial distribution function

* standarization variables and creating clean general function

* modify clean sivigila data function and create general functionto clean depto codes

* create documentation of new clean functions

* refactoring functions of onset and notification date sections

* creating documentation function of notification data and onsent symp

* modify general clean data function

* modify clean sivigila data

* creating components of gender and epiweek section

* creating components of age and gender, special population section

* creating components of age and gender, special population section

* creating components of spacial distribution section

* fixing variables components of special population and gender

* fixing caption text sixe and breaks

* removing message plot map

* fixing caption text sixe and breaks

* fixing caption text size

* fixing caption text size and map

* fixing title distribution age and week, and percentage cases by age

* fixing percentage cases by age

* creating skeleton template of basic report

* updating template package

* adding params to report basic skeleton

* updating the documentation functions of the clean data module

* fix: documentation of functions

* clean: data, functions and files

* clean: list disease and ReadMe file

* remve: title map

* remove day of label

* renaming functions and variables

* updating documentation functions

* renaming function names and refactoring the vignettes content

* renaming function names, refactoring the vignettes content and updating documentation

* updating documentation and titles plots

* updating documentation list_available_diseases_years

* fix: documentation functions, vignettes, ReadMe and Dengue Example

* fixing general documentation

* fix images ReadMe file

* fix: ReadMe file and vignettess

* remove some dependencies and functions deprecated

* Adding tips to ReadMe and Vignettes

* updating size images

* updating size images ReadMe

* adding space ReadMe file

* updating align left images

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* Adding  style images ReadMe and Vignettes

* fix: style images ReadMe and Vignettes

* fix: style images Vignettes

* fix: echo ReadMe

* fix: some variables and typo in ReadMe

* fixing ReadMe and Vignettes, updating website

* adding dependencie map and scale y for plot variable function

* fix> scale y for plot variable function

* improving group functions

* updationg plot map function and dependencies

* updationg plot map function and dependencies

* updationg examples and documentation

* updating examples and documentation

* fix: function examples

* remove files

* fix examples and lintr of modules

* fix message plot

* divide map plot

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* adding new functions to municipalities and departments

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* modify plot and group municipalities and examples

* export functions to departments and municipalities and examples

* fix general syntax and rename functions of municipalities

* fix called of function geo ocurrence

* update template Reporte Basico

* preview basic report

* add function clean cols by exceptions

* adding diseases like input choice on skeleton

* modify forma exceptios cols disease in config file

* adding analysis of notification department and municipality

* update: functions on ReadMe file

* update: version and README files

* fix: typo, identation of code

* update: functions and documentation of subnational report

* generate NAMESPACE

* fix: documentation and definition of import functions

* fix: documentation and definition of plot functions

* update: clean functions and vignette
* Copy pkgdown workflow from pkgtemplate

* Remove docs/ folder

* Remove Meta/ folder
* translation and updated functions and documentation of import data module

* translation and updated functions and documentation of cleaning data module

* translation and updated functions and documentation of group data module

* translation and updated functions and documentation of filter data module

* translation and updated functions and documentation of plotting module

* translation and updated functions and documentation of utils module

* translation and updating of filtering and parsing functions and their documentation

* translation and updating of Reporte Basico template

* translation and updating README files

* translation and updating sections of Reporte Basico template

* updating parameters and exceptions of disease

* translation and updating sections of package vignette

* updating README file with all sections and translated functions

* updating of the import module functions documentation in Spanish

* Updating the documentation of the cleaning module functions in Spanish

* Updating the documentation of the checking module functions in Spanish

* Updating the documentation of the plotting module functions in Spanish

* Updating the documentation of the utils module functions in Spanish

* Updating the documentation of the general functions in Spanish

* Updating get started section and user descriptions of the package in README files and vignette

* deleting some extra files of the Reporte Basico template

* updating users definition and import package README file

* change parameters of skeleton template
@GeraldineGomez GeraldineGomez merged commit f04d557 into main Jul 20, 2023
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2 participants