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47 Open 56 Closed
47 Open 56 Closed
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Issues list

What do the expected output files look like in COMPASS?
#116 opened Oct 30, 2024 by skoturan
Under pathological conditions, is it normal that all metabolic reactions are upregulated?
#114 opened Oct 9, 2024 by jouska540
3
multiprocessing.pool.MaybeEncodingError: Error sending result: '<multiprocessing.pool.ExceptionWithTraceback object at 0x7f840db71ee0>'. Reason: 'TypeError("cannot pickle 'SwigPyObject' object")'
#113 opened Sep 28, 2024 by xwt778
1
tested versions of dependencies for building compass docker image
#112 opened Sep 11, 2024 by rajuadduri
need for Docker image
#111 opened Aug 13, 2024 by pengbo233
3
normalization
#110 opened Jul 22, 2024 by shimasadri
1
Seeking Guidance on Data Format (my own reaction and genes files from KEGG) Conversion for COMPASS Analysis
#108 opened Mar 26, 2024 by ptdang1001
Are there any schematics to visualize where each reaction are at relative to each subsystem?
#107 opened Mar 4, 2024 by ahdee
1
Metabolite secretion/uptake ?
#106 opened Feb 24, 2024 by kmunozforti
Analysis pipeline using RECON2.2 and metabolites
#105 opened Feb 6, 2024 by kmunozforti
AttributeError: 'DataFrame' object has no attribute 'iteritems'
#101 opened Nov 12, 2023 by zhongguozhiwang
7
Can the software use GPU to calculate the reactions.txt. Because CPU is too slow.
#100 opened Oct 28, 2023 by YzGLab
Application to UMI based technology
#99 opened Aug 15, 2023 by Harry25R
Consider using GLPK instead of CPLEX
#98 opened Jun 29, 2023 by emyr666
1
installing cplex package
#97 opened Jun 19, 2023 by bakhtiararya
Use Compass to solve a large amount of time-series bulk RNAseq data
#96 opened Jun 15, 2023 by xiaowaileeli
Run frozen at 0%
#95 opened May 30, 2023 by brycemash
1
Compass analysis from Seurat subcluster - get_reaction_consistencies issue
#90 opened Nov 29, 2022 by france-hub
9
Sample_name problem
#89 opened Nov 20, 2022 by ZachLW
2
Simulating pharmacologic inhibition through FBA?
#88 opened Nov 16, 2022 by agirgis3
where can I get more information about labeled_reactions?
#87 opened Nov 9, 2022 by qiuju-Zhang
1
multiprocessing.pool error or CPLEX error (DEMO file)
#86 opened Nov 7, 2022 by jiangzh-coder
1
Numeric entry is not a double precision number (NaN)
#84 opened Oct 10, 2022 by littleju777
1
how to run model recon3 in recon3-misc branch?
#82 opened Sep 14, 2022 by Roger-GOAT
How to do differential reaction activity analysis between samples in two conditions?
#81 opened Sep 12, 2022 by wang-tan
ProTip! no:milestone will show everything without a milestone.