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where can I get more information about labeled_reactions? #87

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qiuju-Zhang opened this issue Nov 9, 2022 · 1 comment
Open

where can I get more information about labeled_reactions? #87

qiuju-Zhang opened this issue Nov 9, 2022 · 1 comment

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@qiuju-Zhang
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when I study the "Compass Analysis" notebook about analyzing the results of the compass algorithm and replicates figures 2E and 2C from the paper, I found some prior knowledge called "labeled_reaction" was used here.
image
Now, I wanna do more analysis on my own compass results, so I need to get more similar knowledge, could you please tell me where can I get them?

@agirgis3
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Hi there Quiju, try looking at the metadata in this directory and see if it provides what you need:
This file provides metadata on the RECON2 metabolic map - only relevant if that was the model you used to run Compass.
/Compass/tree/master/compass/Resources/Metabolic Models/RECON2_mat/model)/rxnMeta.txt

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