issue #76 - Need to pass up path for SAP signal enrichment kit

SACGF · Oct 25, 2024 · bfd7911 · bfd7911
1 parent 497c37c
commit bfd7911
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/seqauto/management/commands/seqauto_api_client2.py b/seqauto/management/commands/seqauto_api_client2.py
@@ -23,6 +23,7 @@ class EnrichmentKit:
 @dataclass_json
 @dataclass
 class SequencingRun:
+    path: str
     name: str
     date: date
     sequencer: str
@@ -324,7 +325,8 @@ def handle(self, *args, **options):
 
         experiment = "HAEM_20_999"
         enrichment_kit = EnrichmentKit(name='idt_haem', version=1)
-        sequencing_run = SequencingRun(name="Haem_20_999_201231_M02027_0112_000000000_JFT79",
+        sequencing_run = SequencingRun(path=self.HAEM_DIR,
+                                       name="Haem_20_999_201231_M02027_0112_000000000_JFT79",
                                        date="2020-12-31",
                                        sequencer="SN1101",
                                        experiment=experiment,

diff --git a/seqauto/serializers/sequencing_serializers.py b/seqauto/serializers/sequencing_serializers.py
@@ -131,7 +131,7 @@ class SequencingRunSerializer(serializers.ModelSerializer):
 
     class Meta:
         model = SequencingRun
-        fields = ("name", "date", "sequencer", "gold_standard", "bad", "hidden", "experiment", "enrichment_kit", "has_basecalls", "has_interop")
+        fields = ("path", "name", "date", "sequencer", "gold_standard", "bad", "hidden", "experiment", "enrichment_kit", "has_basecalls", "has_interop")
 
     def create(self, validated_data):
         name = validated_data.get('name')