seqauto - get haem test data setup right

SACGF · Sep 10, 2024 · 34a5d82 · 34a5d82
1 parent 813215a
commit 34a5d82
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Showing 6 changed files with 1 addition and 2 deletions.
diff --git a/...0_JFT79/0_fastq/fake_sample_2_R2.fastq.gz → ...000000_JFT79/1_BAM/fake_sample_1.hg38.bam b/...0_JFT79/0_fastq/fake_sample_2_R2.fastq.gz → ...000000_JFT79/1_BAM/fake_sample_1.hg38.bam
diff --git a/...2_000000000_JFT79/1_BAM/fake_sample_1.bam → ...00_JFT79/1_BAM/fake_sample_1.hg38.bam.bai b/...2_000000000_JFT79/1_BAM/fake_sample_1.bam → ...00_JFT79/1_BAM/fake_sample_1.hg38.bam.bai
diff --git a/...ical_hg38/idt_haem/Haem_21_001_210216_M02027_0112_000000000_JFT79/1_BAM/fake_sample_2.bam b/...ical_hg38/idt_haem/Haem_21_001_210216_M02027_0112_000000000_JFT79/1_BAM/fake_sample_2.bam
diff --git a/..._hg38/idt_haem/Haem_21_001_210216_M02027_0112_000000000_JFT79/1_BAM/fake_sample_2.bam.bai b/..._hg38/idt_haem/Haem_21_001_210216_M02027_0112_000000000_JFT79/1_BAM/fake_sample_2.bam.bai
diff --git a/...0000000_JFT79/1_BAM/fake_sample_1.bam.bai → ...000000_JFT79/1_BAM/fake_sample_2.hg38.bam b/...0000000_JFT79/1_BAM/fake_sample_1.bam.bai → ...000000_JFT79/1_BAM/fake_sample_2.hg38.bam
diff --git a/...ata/clinical_hg38/idt_haem/Haem_21_001_210216_M02027_0112_000000000_JFT79/SampleSheet.csv b/...ata/clinical_hg38/idt_haem/Haem_21_001_210216_M02027_0112_000000000_JFT79/SampleSheet.csv
@@ -1,5 +1,4 @@
 FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject,ProjectType,Group,Bioinformatician,E-mail,Adapter,Priming,Notes,conc pM
 test_hiseq_flowcell,3,fake_sample_1,GRCh38,GCCAAT,Foo,N,,XX,SampleProject,WES,tau,,[email protected],KAPA,,,16
-test_hiseq_flowcell,3,hiseq_sample2,GRCh38,CAGATC,Foo,N,,XX,SampleProject,WES,tau,,[email protected],KAPA,,,16
-test_hiseq_flowcell,3,hiseq_sample3,GRCh38,CACCTA,Foo,N,,XX,SampleProject,WES,tau,,[email protected],KAPA,,,16
+test_hiseq_flowcell,3,fake_sample_2,GRCh38,CAGATC,Foo,N,,XX,SampleProject,WES,tau,,[email protected],KAPA,,,16
 #_IEMVERSION_3_TruSeq LT,#_IEMVERSION_3_TruSeq LT,,,,,,,,,,,,,,,,