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Add samtools to dependency, need it for creating fasta indexes
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@davmlaw
davmlaw committed Sep 27, 2023
1 parent eb011a6 commit 0c12730
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2 changes: 1 addition & 1 deletion scripts/install/ubuntu_20_install_dependencies.sh
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Expand Up @@ -4,7 +4,7 @@ set -e # Fail on error

echo "Installing packages via apt-get"
apt-get update
apt-get install -y git-core python3-dev python3-pip python3-gdal gfortran libopenblas-dev liblapack-dev zlib1g-dev bedtools bcftools libbz2-dev liblzma-dev libssl-dev libcurl4-openssl-dev curl
apt-get install -y git-core python3-dev python3-pip python3-gdal gfortran libopenblas-dev liblapack-dev zlib1g-dev bedtools bcftools samtools libbz2-dev liblzma-dev libssl-dev libcurl4-openssl-dev curl
apt-get install -y libblas-dev libatlas-base-dev libpng-dev libjpeg-dev libfreetype6-dev libpq-dev libxft-dev zlib1g-dev libxml2-dev libxslt1-dev rustc
apt-get install -y gunicorn nginx redis-server rabbitmq-server postgresql postgresql-contrib libpq-dev
# actually only needed for development
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