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Update README.md
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Suggest installing from source first
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sinamajidian authored Oct 19, 2023
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Expand Up @@ -9,26 +9,7 @@ read2tree works in linux with [![Python 3.10.8](https://img.shields.io/badge/py

There are three ways to install read2tree. You can choose either of them.

### 1) Installation using Conda


```
conda create -n r2t python=3.10.8
conda install -c bioconda read2tree
```


### 2) Installation using Docker
The Dockerfile is also available in this repository. There is an example how to run in the [test example](#test-example) section.

A prebuild container can be loaded from dockerhub:
```
docker pull dessimozlab/read2tree:latest
```


### 3) Installation from source
### 1) Installation from source

To set up read2tree on your local machine from source please follow the instructions below.

Expand All @@ -54,6 +35,27 @@ python setup.py install
```


### 2) Installation using Conda


```
conda create -n r2t python=3.10.8
conda install -c bioconda read2tree
```


### 3) Installation using Docker
The Dockerfile is also available in this repository. There is an example how to run in the [test example](#test-example) section.

A prebuild container can be loaded from dockerhub:
```
docker pull dessimozlab/read2tree:latest
```





## Run

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