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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 143 18

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 69 5

  3. OMArk OMArk Public

    Python 60 6

  4. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 31 7

  5. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 28 10

  6. omamer omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    Python 16 5

Repositories

Showing 10 of 41 repositories
  • gethogs Public

    A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

    DessimozLab/gethogs’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 30, 2024
  • omamer Public

    OMAmer - tree-driven and alignment-free protein assignment to sub-families

    DessimozLab/omamer’s past year of commit activity
    Python 16 LGPL-3.0 5 2 1 Updated Oct 30, 2024
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 1 0 0 0 Updated Oct 30, 2024
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma’s past year of commit activity
    Python 1 MPL-2.0 0 0 1 Updated Oct 30, 2024
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 31 MPL-2.0 7 3 3 Updated Oct 30, 2024
  • ldo_study Public
    DessimozLab/ldo_study’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 29, 2024
  • fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    DessimozLab/fold_tree’s past year of commit activity
    Jupyter Notebook 69 MIT 5 6 0 Updated Oct 28, 2024
  • matreex Public
    DessimozLab/matreex’s past year of commit activity
    HTML 16 2 0 0 Updated Oct 25, 2024
  • read2tree Public

    a tool for inferring species tree from sequencing reads

    DessimozLab/read2tree’s past year of commit activity
    Python 143 MIT 18 18 0 Updated Oct 22, 2024
  • HogProf Public

    Phylogenetic profiling with orthology data

    DessimozLab/HogProf’s past year of commit activity
    Jupyter Notebook 9 MIT 2 0 1 Updated Oct 18, 2024
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