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18 Open 45 Closed
18 Open 45 Closed
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Issues list

Question: generate marker genes from mitochondrion refseq
#67 opened Oct 15, 2024 by brutal588
2
TypeError: cannot unpack non-iterable NoneType object
#60 opened Apr 17, 2024 by pengyan19
3
AttributeError when running OGset.py
#59 opened Mar 8, 2024 by scuadros28
11
BUG?: KeyError(s) when running read2tree
#58 opened Mar 6, 2024 by almosnow
3
QUESTION: Hetero sites.
#53 opened Dec 11, 2023 by mudymudy
Adding species but not repeating the mapping of existing species enhancement New feature or request question Further information is requested
#51 opened Nov 29, 2023 by Yuqia
1
IndexError: list assignment index out of range in Mapper.py
#46 opened Oct 16, 2023 by bernard-kim
1
RuntimeError: generator raised StopIteration
#45 opened Oct 16, 2023 by bernard-kim
Error for some reads when conducting mapping step
#42 opened Sep 10, 2023 by GYQ-form
4
possible error in the help message of --sample_reads documentation Improvements or additions to documentation
#40 opened Sep 3, 2023 by lilindu
1
OGs did not have any DNA
#36 opened Aug 16, 2023 by Alfred-RRu
4
read2tree can't find corresponding CDS for each OMA group
#33 opened Jul 12, 2023 by sci-study
2
How to add more marker genes
#28 opened May 15, 2023 by mudymudy
10
TypeError: __init__() takes 2 positional arguments but 3 were given
#24 opened May 5, 2023 by marcejuarez90
3
Error with ngm binary
#23 opened Apr 27, 2023 by 3miumi
4
Can read2tree be run offline and with custom marker gene list?
#22 opened Apr 26, 2023 by masudermann
3
Installation issue
#19 opened Apr 21, 2023 by dhpalmer
5
No tree generated after running multiple species mode
#8 opened Aug 26, 2022 by wrengs
13
ProTip! no:milestone will show everything without a milestone.