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fix workflow with renamed test marker dna_ref file
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alpae committed Feb 2, 2024
1 parent ff2d167 commit ed6d7eb
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion .github/workflows/docker-image.yml
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ jobs:
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name: Test
run: |
docker run --rm -i -v $PWD/tests:/input -v $PWD/tests/:/reads -v $PWD/output:/out -v $PWD/run:/run ${{ env.TEST_TAG }} --tree --standalone_path /input/marker_genes --dna_reference /input/cds-marker_genes.fasta.gz --reads /reads/sample_1.fastq --output_path /out
docker run --rm -i -v $PWD/tests:/input -v $PWD/tests/:/reads -v $PWD/output:/out -v $PWD/run:/run ${{ env.TEST_TAG }} --tree --standalone_path /input/marker_genes --dna_reference /input/dna_ref.fa --reads /reads/sample_1.fastq --output_path /out
if [ ! -f output/tree_sample_1.nwk ] ; then exit 1; fi
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name: Login to DockerHub
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