Update SummarizeQuantTab.py (#238) #31
Workflow file for this run
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| name: Releases | |
| on: | |
| push: | |
| tags: | |
| - "[0-9]+.[0-9]+.[0-9]+" | |
| jobs: | |
| githubrelease: | |
| runs-on: windows-latest | |
| timeout-minutes: 15 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup .NET | |
| uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: 6.0.x | |
| - name: Verify commit exists in release branch | |
| run: | | |
| git fetch --no-tags --prune --depth=1 origin +refs/heads/*:refs/remotes/origin/* | |
| git branch --remote --contains | grep origin/${env:RELEASE_BRANCH} | |
| env: | |
| RELEASE_BRANCH: master | |
| - name: Restore dependencies | |
| run: dotnet restore Spritz/Spritz.sln | |
| - name: Build | |
| run: | | |
| $version= &git describe --tags | |
| dotnet build --no-restore --configuration Release /p:Version=${version} /p:Platform=x64 Spritz/Spritz.sln | |
| - name: Test | |
| run: | | |
| $version= &git describe --tags | |
| dotnet test --configuration Release /p:Platform=x64 /p:Version=${version} --no-build Spritz/Spritz.sln | |
| - name: Setup msbuild | |
| uses: microsoft/[email protected] | |
| - name: Build Installer | |
| run: | | |
| $version= &git describe --tags | |
| msbuild Spritz/SpritzInstaller/SpritzInstaller.wixproj /p:Configuration=Release /p:Version=${version} | |
| - name: Create archive | |
| uses: thedoctor0/[email protected] | |
| with: | |
| type: 'zip' | |
| filename: 'SpritzCMD.zip' | |
| path: Spritz/SpritzCMD/bin/x64/Release/net6.0/ | |
| directory: ./ | |
| - name: Upload SpritzCMD | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.UPLOAD_TOKEN }} | |
| file: SpritzCMD.zip | |
| tag: ${{ github.ref }} | |
| - name: Upload Installer | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.UPLOAD_TOKEN }} | |
| file: Spritz/SpritzInstaller/bin/Release/Spritz.msi | |
| tag: ${{ github.ref }} | |
| dockerrelease: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 90 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup .NET | |
| uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: 6.0.x | |
| - name: Restore dependencies | |
| run: dotnet restore Spritz/SpritzCMD/SpritzCMD.csproj | |
| - name: Build SpritzCMD | |
| run: dotnet build --no-restore /p:Platform=x64 --configuration Release Spritz/SpritzCMD/SpritzCMD.csproj | |
| - name: Build docker image | |
| run: docker build -t spritz ./Spritz/ | |
| - name: Run quick test, reference database | |
| run: docker run --user=root spritz conda run --no-capture-output --live-stream dotnet SpritzCMD.dll -a=/app/spritz/results/ -r="release-96,saccharomyces_cerevisiae,baker's yeast,R64-1-1" | |
| - name: Login, tag, and push | |
| run: | | |
| echo ${{ secrets.DOCKERHUB_TOKEN }} | docker login -u ${{ secrets.DOCKERHUB_USERNAME }} --password-stdin | |
| version=$(git describe --tags) | |
| docker tag spritz ${{ secrets.DOCKERHUB_USERNAME }}/spritz:$version | |
| docker push ${{ secrets.DOCKERHUB_USERNAME }}/spritz:$version |