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pnrobinson committed Jan 7, 2024
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126 changes: 126 additions & 0 deletions src/ontology/hp-edit.owl
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Expand Up @@ -17313,6 +17313,9 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430034>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430035>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430036>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430037>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430043>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430044>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0430045>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0500001>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0500005>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_0500006>))
Expand Down Expand Up @@ -18242,6 +18245,16 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000127>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000128>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000129>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000130>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000131>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000132>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000133>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000134>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000135>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000136>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000137>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000138>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000139>))
Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000140>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0014932>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_1000009>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/HP_0034334>))
Expand Down Expand Up @@ -211946,6 +211959,30 @@ AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0430037> "20
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0430037> "Abnormal alcohol consumption"@en)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0430037> <http://purl.obolibrary.org/obo/HP_0030858>)

# Class: <http://purl.obolibrary.org/obo/HP_0430043> (Thoracic lordosis)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30195269") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0430043> "Thoracic lordosis refers to an abnormal curvature of the thoracic spine in which the thoracic spine displays lordosis (inward curve) instead of the normal kyphosis (outward curve).")
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0430043> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0430043> "2024-01-06T09:37:42Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0430043> "Thoracic lordosis"@en)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0430043> <http://purl.obolibrary.org/obo/HP_0010674>)

# Class: <http://purl.obolibrary.org/obo/HP_0430044> (Radiation into left arm)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0430044> "Refers to pain or discomfort that is perceived to travel from the chest into the left arm.")
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0430044> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0430044> "2024-01-06T09:39:29Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0430044> "Radiation into left arm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0430044> <http://purl.obolibrary.org/obo/HP_0012836>)

# Class: <http://purl.obolibrary.org/obo/HP_0430045> (Radiation into right arm)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0430045> "Refers to pain or discomfort that is perceived to travel from the chest into the right arm.")
AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0430045> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0430045> "2024-01-06T09:40:24Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0430045> "Radiation into right arm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/HP_0430045> <http://purl.obolibrary.org/obo/HP_0012836>)

# Class: <http://purl.obolibrary.org/obo/HP_0500001> (Body odor)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://orcid.org/0000-0002-0736-9199>) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0500001> "A perceived unpleasant smell given off by the body.")
Expand Down Expand Up @@ -221232,6 +221269,95 @@ AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_60001
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000130> "Elevated urinary indican level")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000130> <http://purl.obolibrary.org/obo/HP_0033354>)

# Class: <http://purl.obolibrary.org/obo/HP_6000131> (Reduced phytanic acid oxidase activity in cultured fibroblasts)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:2433405") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000131> "Acitivity of phytanic acid oxidase below the lower limit of normal in cultured fibroblasts.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000131> <https://github.com/obophenotype/human-phenotype-ontology/issues/7938>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000131> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000131> "PhyH activity low in fibroblasts")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000131> "Reduced phytanic acid oxidase activity in cultured fibroblasts")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000131> <http://purl.obolibrary.org/obo/HP_4000195>)

# Class: <http://purl.obolibrary.org/obo/HP_6000132> (Reduced erythrocyte gamma-glutamyl cysteine synthetase activity)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:12663448") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000132> "Activity of gamma-glutamylcysteine synthetase (EC 6.3.2.2) in erythrocytes below the lower limit of normal.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000132> <https://github.com/obophenotype/human-phenotype-ontology/issues/7940>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000132> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000132> "Gamma-glutamyl cysteine synthetase low in erythrocytes")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000132> "Reduced erythrocyte gamma-glutamyl cysteine synthetase activity")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000132> <http://purl.obolibrary.org/obo/HP_0030272>)

# Class: <http://purl.obolibrary.org/obo/HP_6000133> (Decreased circulating nicotinamide adenine dinucleotide-cytochrome b5 reductase activity)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:8874222") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000133> "The activity of nicotinamide adenine dinucleotide (NADH)-cytochrome b5 reductase in the blood circulation is below the lower limit of normal.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000133> <https://github.com/obophenotype/human-phenotype-ontology/issues/7941>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000133> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000133> "NADH-cytochrome b5 reductase low")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000133> "Decreased circulating nicotinamide adenine dinucleotide-cytochrome b5 reductase activity")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000133> <http://purl.obolibrary.org/obo/HP_0012379>)

# Class: <http://purl.obolibrary.org/obo/HP_6000134> (Reduced alpha-methylacyl-CoA racemase activity in cultured fibroblasts)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:10655068") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000134> "Activity of alpha-methylacyl-CoA racemase (AMACR; EC 5.1.99.4) below the lower limit of normal in cultured fibroblasts.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000134> <https://github.com/obophenotype/human-phenotype-ontology/issues/7942>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000134> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000134> "Reduced alpha-methylacyl-CoA racemase activity in cultured fibroblasts")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000134> <http://purl.obolibrary.org/obo/HP_4000195>)

# Class: <http://purl.obolibrary.org/obo/HP_6000135> (Low semen volume)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000135> "Volume of semen in ejaculate below the lower limit of normal. This finding can be ascertained by semen analysis. Comment: Sperm are produced within the testis, in the process of spermatogenesis, then travel through the male reproductive tract (the seminiferous tubules, epididymis, vas deferens, prostate and urethra). As the sperm travel, seminal fluid is added from the seminal vesicles, prostate, testis and epididymis and periurethral glands. The function of the ejaculate is to transport sperm into the female genital tract and to provide a suitable environment for sperm survival during this transit.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000135> <https://github.com/obophenotype/human-phenotype-ontology/issues/7955>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000135> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000135> "Low semen volume")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000135> <http://purl.obolibrary.org/obo/HP_0012874>)

# Class: <http://purl.obolibrary.org/obo/HP_6000136> (Elbow localization)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000136> "Applies to an abnormality that is situated in (or predominant in) the elbow.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000136> <https://github.com/obophenotype/human-phenotype-ontology/issues/7973>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000136> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000136> "Elbow localization")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000136> <http://purl.obolibrary.org/obo/HP_0012838>)

# Class: <http://purl.obolibrary.org/obo/HP_6000137> (Enlarged lunula)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:30245952") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000137> "Abnormal enlargement of the visible portion of the distal nail matrix that extends beyond the proximal nail fold, which is refered to as the lunula.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000137> <https://github.com/obophenotype/human-phenotype-ontology/issues/7974>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000137> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000137> "Macrolunula")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000137> "Nails: lunulae enlarged")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000137> "Enlarged lunula")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000137> <http://purl.obolibrary.org/obo/HP_0001597>)

# Class: <http://purl.obolibrary.org/obo/HP_6000138> (Heel localization)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000138> "Applies to an abnormality that is situated in (or predominant in) the heel.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000138> <https://github.com/obophenotype/human-phenotype-ontology/issues/7976>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000138> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000138> "Heel predominance")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000138> "Heel localization")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000138> <http://purl.obolibrary.org/obo/HP_0012838>)

# Class: <http://purl.obolibrary.org/obo/HP_6000139> (Splinter hemorrhages)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:36050132") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000139> "Thin, red to reddish-brown lines of blood (hemorrhages) under the nails. Splinter hemorrhages run vertically under the nails.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000139> <https://github.com/obophenotype/human-phenotype-ontology/issues/7979>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000139> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000139> "Splinter hemorrhages represent rupture of longitudinally oriented nail plate capillaries leading to extravasation and the historical hallmark of linear discoloration. See figure 1 of PMID:36050132.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000139> "Splinter hemorrhages")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000139> <http://purl.obolibrary.org/obo/HP_0001597>)

# Class: <http://purl.obolibrary.org/obo/HP_6000140> (Lateral thrust)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:23948980") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:37266363") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000140> "Lateral thrust (LT) refers to an abnormal knee joint motion in the early stance phase where the knee joint center moves laterally. Also known as varus thrust, LR is defined as the dynamic worsening or abrupt onset of varus (bow-leg) alignment as the limb accepts weight (stance phase), with a return to less varus and more neutral alignment during lift-off and the non-weight-bearing (swing) phase of gait, varus thrust is a potent mechanical risk factor for medial knee osteoarthritis progression.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000140> <https://github.com/obophenotype/human-phenotype-ontology/issues/7980>)
AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000140> <https://orcid.org/0000-0002-0736-9199>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000140> "Varus thrust")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000140> "LT visualized during walking is associated with a greater medial knee load and an increased risk of medial knee osteoarthritis (OA) progression.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000140> "Lateral thrust")
SubClassOf(<http://purl.obolibrary.org/obo/HP_6000140> <http://purl.obolibrary.org/obo/HP_0034670>)


SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/BFO_0000050>) <http://purl.obolibrary.org/obo/RO_0002314>)
)

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