New terms

obophenotype · Jan 4, 2024 · e5e328a · e5e328a
1 parent b854226
commit e5e328a
Showing 1 changed file with 126 additions and 4 deletions.
diff --git a/src/ontology/hp-edit.owl b/src/ontology/hp-edit.owl
@@ -15698,6 +15698,12 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040417>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040418>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040419>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040420>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040421>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040422>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040423>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040424>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040425>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_0040426>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0041042>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0041043>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_0041044>))
@@ -18229,6 +18235,13 @@ Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000120>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000121>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000122>))
 Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000123>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000124>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000125>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000126>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000127>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000128>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000129>))
+Declaration(Class(<http://purl.obolibrary.org/obo/HP_6000130>))
 Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0014932>))
 Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_1000009>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/HP_0034334>))
@@ -125514,7 +125527,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <ht
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/HP_0011814> "HP:0011814")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0011814> "Increased urinary hypoxanthine level")
 EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0011814> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000470> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_17368> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001088>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0011814> <http://purl.obolibrary.org/obo/HP_0033354>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0011814> <http://purl.obolibrary.org/obo/HP_0040425>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0011815> (Cephalocele)
 
@@ -173667,19 +173680,19 @@ SubClassOf(<http://purl.obolibrary.org/obo/HP_0033158> <http://purl.obolibrary.o
 
 # Class: <http://purl.obolibrary.org/obo/HP_0033159> (Reduced urinary inosine level)
 
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:402573") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0033159> "Decreased level of inosine in urine. Inosine is a purine nucleoside in which hypoxanthine is attached to ribofuranose via a beta-N(9)-glycosidic bond.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:402573") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0033159> "The amount of inosine in the urine, normalized for urine concentration, is below the lower limit of normal. Inosine is a purine nucleoside in which hypoxanthine is attached to ribofuranose via a beta-N(9)-glycosidic bond.")
 AnnotationAssertion(dc:date <http://purl.obolibrary.org/obo/HP_0033159> "2020-09-24T09:10:03Z"^^xsd:dateTime)
 AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0033159> <https://orcid.org/0000-0002-0736-9199>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0033159> "Reduced urinary inosine level")
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0033159> <http://purl.obolibrary.org/obo/HP_0033161>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0033159> <http://purl.obolibrary.org/obo/HP_0040421>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0033160> (Decreased urinary guanosine level)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0033160> "The amount of guanosine in the urine, normalized for urine concentration, is below the lower limit of normal. Guanosine is a purine nucleoside in which guanine is attached to ribofuranose via a beta-N(9)-glycosidic bond.")
 AnnotationAssertion(dc:date <http://purl.obolibrary.org/obo/HP_0033160> "2020-09-24T09:11:27Z"^^xsd:dateTime)
 AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0033160> <https://orcid.org/0000-0002-0736-9199>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0033160> "Decreased urinary guanosine level")
-SubClassOf(<http://purl.obolibrary.org/obo/HP_0033160> <http://purl.obolibrary.org/obo/HP_0033161>)
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0033160> <http://purl.obolibrary.org/obo/HP_0040423>)
 
 # Class: <http://purl.obolibrary.org/obo/HP_0033161> (Abnormal urinary purine level)
 
@@ -193199,6 +193212,56 @@ AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040420> "20
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040420> "Decreased urinary neopterin level")
 SubClassOf(<http://purl.obolibrary.org/obo/HP_0040420> <http://purl.obolibrary.org/obo/HP_0040416>)
 
+# Class: <http://purl.obolibrary.org/obo/HP_0040421> (Abnormal urinary inosine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0040421> "The amount of inosine in the urine, normalized for urine concentration, is outside the limits of normal.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040421> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040421> "2024-01-04T06:53:24Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040421> "Abnormal urinary inosine level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0040421> <http://purl.obolibrary.org/obo/HP_0033161>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_0040422> (Elevated urinary inosine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0040422> "The amount of inosine in the urine, normalized for urine concentration, is above the upper limit of normal.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040422> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040422> "2024-01-04T06:54:26Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040422> "Elevated urinary inosine level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0040422> <http://purl.obolibrary.org/obo/HP_0040421>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_0040423> (Abnormal urinary guanosine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0040423> "The amount of guanosine in the urine, normalized for urine concentration, is outside the limits of normal.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040423> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040423> "2024-01-04T07:13:58Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040423> "Abnormal urinary guanosine level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0040423> <http://purl.obolibrary.org/obo/HP_0033161>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_0040424> (Elevated urinary guanosine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0040424> "The amount of guanosine in the urine, normalized for urine concentration, is above the upper limit of normal.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040424> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040424> "2024-01-04T07:14:41Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040424> "Elevated urinary guanosine level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0040424> <http://purl.obolibrary.org/obo/HP_0040423>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_0040425> (Abnormal urinary hypoxanthine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0040425> "The concentration of hypoxanthine in the urine, normalized for urine concentration, is outside of normal limits.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040425> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040425> "2024-01-04T07:26:36Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040425> "Abnormal urinary hypoxanthine level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0040425> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_17368> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001088>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0040425> <http://purl.obolibrary.org/obo/HP_0033161>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_0040426> (Decreased urinary hypoxanthine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0040426> "The concentration of hypoxanthine in the urine, normalized for urine concentration, is below the lower limit of normal.")
+AnnotationAssertion(dcterms:creator <http://purl.obolibrary.org/obo/HP_0040426> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(dcterms:date <http://purl.obolibrary.org/obo/HP_0040426> "2024-01-04T07:26:46Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_0040426> "Decreased urinary hypoxanthine level")
+EquivalentClasses(<http://purl.obolibrary.org/obo/HP_0040426> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001997> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_17368> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001088>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
+SubClassOf(<http://purl.obolibrary.org/obo/HP_0040426> <http://purl.obolibrary.org/obo/HP_0040425>)
+
 # Class: <http://purl.obolibrary.org/obo/HP_0041042> (Absent neutrophil lactoferrin)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:6155073") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_0041042> "The absence of lactoferrin in neutrophil granules, which could be caused by either an isolated failure of synthesis of this protein (or the production of an antigenically unrecognizable form of lactoferrin) or a complete deficiency of specific granule production.")
@@ -221110,6 +221173,65 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000123> "Elevated urinary 2'-deoxyadenosine level")
 SubClassOf(<http://purl.obolibrary.org/obo/HP_6000123> <http://purl.obolibrary.org/obo/HP_0033161>)
 
+# Class: <http://purl.obolibrary.org/obo/HP_6000124> (Positive 2,4-dinitrophenylhydrazine urine test)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:32491705") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000124> "Positive (abnormal) result of the 2,4-dinitrophenylhydrazine urine test, which indicates the presence of alpha-ketoacids in the urine.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000124> <https://github.com/obophenotype/human-phenotype-ontology/issues/8794>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000124> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000124> "Positive 2,4-dinitrophenylhydrazine urine test")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000124> <http://purl.obolibrary.org/obo/HP_0033456>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_6000125> (Elevated urinary dolichol level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000125> "The amount of dolichol in the urine, normalized for urine concentration, is above the upper limit of normal.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000125> <https://github.com/obophenotype/human-phenotype-ontology/issues/8796>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000125> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000125> "Dolichol levels high in urine")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000125> "Elevated urinary dolichol level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000125> <http://purl.obolibrary.org/obo/HP_0033354>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_6000126> (Decreased urinary bile acid level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000126> "The amount of bile acids in the urine, normalized for urine concentration, is below the lower limit of normal.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000126> <https://github.com/obophenotype/human-phenotype-ontology/issues/8797>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000126> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000126> "Decreased urinary bile acid level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000126> <http://purl.obolibrary.org/obo/HP_0031980>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_6000127> (Elevated urinary creatine/creatinine ratio)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:27096572") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000127> "The ratio of creatine to creatinine concentration in the urine is above the upper limit of normal.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000127> <https://github.com/obophenotype/human-phenotype-ontology/issues/8799>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000127> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/HP_6000127> "Increased urine Cr/Crn ratio")
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/HP_6000127> "This finding is suggestive of a disorder of creatine metabolism.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000127> "Elevated urinary creatine/creatinine ratio")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000127> <http://purl.obolibrary.org/obo/HP_0033354>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_6000128> (Elevated urinary thymidine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000128> "The amount of thymidine in the urine, normalized for urine concentration, is below the lower limit of normal.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000128> <https://github.com/obophenotype/human-phenotype-ontology/issues/8801>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000128> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000128> "Elevated urinary thymidine level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000128> <http://purl.obolibrary.org/obo/HP_0033162>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_6000129> (Elevated urinary glutarylglycine level)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000129> "The amount of glutarylglycine in the urine, normalized for urine concentration, is below the lower limit of normal.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000129> <https://github.com/obophenotype/human-phenotype-ontology/issues/8803>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000129> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000129> "Elevated urinary glutarylglycine level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000129> <http://purl.obolibrary.org/obo/HP_0040156>)
+
+# Class: <http://purl.obolibrary.org/obo/HP_6000130> (Elevated urinary indican level)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:6417635") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/HP_6000130> "Detection of indican in the urine. Urinary indican concentration may be elevated in small bowel bacterial overgrowth. Indican is produced by bacterial deconjugation of dietary tryptophan to indole which is absorbed at all levels of the intestine, but principally from the small bowel.")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000233> <http://purl.obolibrary.org/obo/HP_6000130> <https://github.com/obophenotype/human-phenotype-ontology/issues/8823>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/HP_6000130> <https://orcid.org/0000-0002-0736-9199>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/HP_6000130> "Elevated urinary indican level")
+SubClassOf(<http://purl.obolibrary.org/obo/HP_6000130> <http://purl.obolibrary.org/obo/HP_0033354>)
+
 
 SubObjectPropertyOf(ObjectPropertyChain(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/BFO_0000050>) <http://purl.obolibrary.org/obo/RO_0002314>)
 )