Mondo namespace update

[joeflack4]

Updates

Mondo namespace update

• Add missing prefix map / synchronize curie_map.yaml with namespaces.py. Add missing MONDONS prefix map.

Background & additional info

I was looking at omim.ttl and I expected to see something like MONDONS instead of ns1, which is what I saw:

@prefix HGNC_symbol: <https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/> .
@prefix IAO: <http://purl.obolibrary.org/obo/IAO_> .
@prefix MONDO: <http://purl.obolibrary.org/obo/MONDO_> .
@prefix OMIM: <https://omim.org/entry/> .
@prefix OMIMPS: <https://omim.org/phenotypicSeries/PS> .
...
@prefix ns1: <http://purl.obolibrary.org/obo/mondo#> .
...
ns1:omim_included a owl:AnnotationProperty .
...
OMIM:103100 a owl:Class ;
    ns1:omim_included "holmes-adie syndrome" ;
    ...

I made an update to make curie_map.yaml consistent with namespaces.py:

omim/omim2obo/namespaces.py

Line 251 in db4ddd2

MONDONS = Namespace('http://purl.obolibrary.org/obo/mondo#')

In omim.owl(RDF/XML) this doesn't matter because it uses URIs instead of CURIEs. AFAIK, this doesn't have any effect that matters other than consistency when looking at omim.ttl, which is not a release file. But I'm not 100% sure. So we could leave this open for future examination, or just close it, if we're worried about potential side effects.

Related:

• DRYify CURIE maps / namespaces #134

[twhetzel]

lgtm