GPSEA (Genotypes and Phenotypes - Statistical Evaluation of Associations) is a Python package for finding genotype-phenotype associations.

See our documentation for the setup instructions, a tutorial with an end-to-end genotype-phenotype association analysis, and a comprehensive user guide with everything else.

The documentation comes in two flavors:

• Stable documentation (last release on main branch)
• Latest documentation (bleeding edge, latest commit on develop branch)