Merge pull request #22 from monarch-initiative/fix-limiting-of-closur…

…e-fields fix limiting of closure fields
monarch-initiative · Jan 15, 2025 · faf9327 · faf9327
2 parents e3f9d8d + 95e8e9a
commit faf9327
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Showing 2 changed files with 8 additions and 4 deletions.
diff --git a/closurizer/closurizer.py b/closurizer/closurizer.py
@@ -8,10 +8,14 @@ def edge_columns(field: str, include_closure_fields: bool =True):
     column_text = f"""
        {field}.name as {field}_label, 
        {field}.category as {field}_category,
-       {field}.namespace as {field}_namespace,
-       list_aggregate({field}_closure.closure, 'string_agg', '|') as {field}_closure,
-       list_aggregate({field}_closure_label.closure_label,'string_agg', '|') as {field}_closure_label,    
+       {field}.namespace as {field}_namespace,       
     """
+    if include_closure_fields:
+        column_text += f"""
+        {field}_closure.closure as {field}_closure,
+        {field}_closure_label.closure_label as {field}_closure_label,
+        """
+
     if field in ['subject', 'object']:
         column_text += f"""
         {field}.in_taxon as {field}_taxon,

diff --git a/pyproject.toml b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "closurizer"
-version = "0.7.0"
+version = "0.7.1"
 description = "Add closure expansion fields to kgx files following the Golr pattern"
 authors = ["Kevin Schaper <[email protected]>"]