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add tongue swab #626

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merged 2 commits into from
Nov 30, 2023
Merged

add tongue swab #626

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ac59541
add tongue to tsv
Nov 30, 2023
0c8d23f
update definitions. Close #595
Nov 30, 2023
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3 changes: 2 additions & 1 deletion src/patterns/data/manual/swab_by_location.tsv
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Expand Up @@ -8,4 +8,5 @@ MAXO:0010307 skin swab collection UBERON:0000014 zone of skin http://orcid.org/0
MAXO:0010308 oropharyngeal swab collection UBERON:0001729 oropharynx http://orcid.org/0000-0001-7941-2978 2020-03-27T20:39:14Z
MAXO:0010309 anterior nares swab collection UBERON:0005928 external naris http://orcid.org/0000-0001-7941-2978 2020-03-27T20:39:14Z anterior naris swab
MAXO:0010310 UBERON:0000341 throat http://orcid.org/0000-0001-7941-2978 2020-03-27T20:39:14Z
MAXO:0001159 endocervical swab collection UBERON:0000458 endocervix http://orcid.org/0000-0001-7941-2978 2021-02-15T20:39:14Z endocervical swab
MAXO:0001159 endocervical swab collection UBERON:0000458 endocervix http://orcid.org/0000-0001-7941-2978 2021-02-15T20:39:14Z endocervical swab
MAXO:0010131 UBERON:0001723 tongue http://orcid.org/0000-0001-7941-2978 2023-11-30T20:39:14Z
2 changes: 1 addition & 1 deletion src/patterns/data/todo/MAXO_availableIDs.txt
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Expand Up @@ -2,7 +2,7 @@



MAXO:0010131

MAXO:0010132
MAXO:0010133
MAXO:0010134
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14 changes: 12 additions & 2 deletions src/patterns/definitions.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/maxo/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/maxo/releases/2023-11-09/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-11-09")
<http://purl.obolibrary.org/obo/maxo/releases/2023-11-30/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-11-30")

Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_12777>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_131795>))
Expand Down Expand Up @@ -1279,6 +1279,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010127>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010128>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010129>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010130>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010131>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010200>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010201>))
Declaration(Class(<http://purl.obolibrary.org/obo/MAXO_0010202>))
Expand Down Expand Up @@ -9844,6 +9845,15 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynony
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MAXO_0010130> "oral contraceptive agent therapy")
EquivalentClasses(<http://purl.obolibrary.org/obo/MAXO_0010130> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/MAXO_0000058> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/MAXO_0000864> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/CHEBI_24431> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000087> <http://purl.obolibrary.org/obo/CHEBI_49325>)))))

# Class: <http://purl.obolibrary.org/obo/MAXO_0010131> (tongue swab collection)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010131> "Collection biological material from within the tongue with a cotton swab for use in clinical tests.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/dcterms_creator> <http://purl.obolibrary.org/obo/MAXO_0010131> "http://orcid.org/0000-0001-7941-2978")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/MAXO_0010131> "2023-11-30T20:39:14Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/MAXO_0010131> "swab collection of tongue")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/MAXO_0010131> "tongue swab collection")
EquivalentClasses(<http://purl.obolibrary.org/obo/MAXO_0010131> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/MAXO_0009099> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002233> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001723>))))

# Class: <http://purl.obolibrary.org/obo/MAXO_0010200> (abdominal ultrasonography)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/MAXO_0010200> "A method of ultrasound imaging in which the ultrasound probe is pressed against the skin of the abdomen in order to create an image of the abdominal organs.")
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