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First draft of stationary extreme value analysis module #175

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First draft of stationary extreme value analysis module #175

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Commits on May 14, 2024

  1. First proof-of-concept version of Extremes.jl wrapper, attempt no4 at… 

    … pushing
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Commits on May 22, 2024

  1. Simplified parameterestimation subpackage structure, created working … 

    …solution for multiple dispatch of julia function, and started implementing conversions for Extremes.jl data structures
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Commits on May 23, 2024

  1. Modifications to multiple-dispatch structure for maximumikelihood par… 

    …ameter estimation
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Commits on May 24, 2024

  1. Conversions of pandas dataframes <-> julia dataframes and modificatio… 

    …ns to multiple dispatch architecture of gevfit()
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Commits on May 29, 2024

  1. Added many conversion rules between julia and python objects

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Commits on May 31, 2024

  1. Added xarray.DataArray <-> Julia DataFrame conversion

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  2. Reverting hotfix for xclim, xscen version and adding juliacall to env… 

    …ironment
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Commits on Jun 4, 2024

  1. Fixed python BlockMaxima <-> julia BlockMaxima conversions + simplifi… 

    …ed 'structures' subpackage structure
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  2. Added some utility functions for AbstractFittedExtremeValueModel

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Commits on Jun 5, 2024

  1. Utility functions for fitted models + standardized cluster.py in acco… 

    …rdance with rest of extreme_value_analysis package
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Commits on Jun 7, 2024

  1. First attempt at overall fit() function for extremes values analysis

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Commits on Jun 12, 2024

  1. Fixed imports + added global fit() in extreme_value_analysis with sim… 

    …ilar API to the one in xclim
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Commits on Jun 20, 2024

  1. Debugging bayesian and maximumlikelihood estimations

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Commits on Jun 21, 2024

  1. modifying parameterestimation to directly return parameters

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Commits on Jun 27, 2024

  1. Tests for extreme_value_analysis stationary fitting

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Commits on Jun 28, 2024

  1. Using getattr() to get the parameters from the fitted model instead o… 

    …f Extremes.params()
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Commits on Jul 4, 2024

  1. Changing bayesien estimation to do average over simulations. Diff is … 

    …big because of folder name change
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Commits on Jul 5, 2024

  1. Changing package name to xhydro-temp for deployment testing to avoid … 

    …conflict with xhydro
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Commits on Jul 10, 2024

  1. changing julia dependancy loading and pruning unnecessary code

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Commits on Jul 18, 2024

  1. Preparing for merge with main

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  2. Cleaning notebooks

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  3. Renamed package to xhydro

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  4. Fixing merge conflict with main

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Commits on Jul 19, 2024

  1. Removed duplicate of xhydro created during main -> extreme_value_anal… 

    …ysis merge
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  2. hotfix for the .yaml pre-commit checks that fail on windows because o… 

    …f long lines
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Commits on Jul 22, 2024

  1. Merge branch 'main' into extremes-wrapper

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  2. Linting fix part 2

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  3. Adding pyjuliacall to dependencies for PR pipeline

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Commits on Jul 23, 2024

  1. Small static code fixes

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  2. Merge branch 'main' into extremes-wrapper

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  3. Merge 'main' into 'extremes-wrapper'

    @Sci-pio
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  4. Fixing new line lint errors

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  5. Adding author, deleting unecessary file and rerunning tests on github

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Commits on Jul 24, 2024

  1. Modifying test tolerance for genpareto distribution

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  2. Adding extreme_value_analysis.ipynb to index.rst

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Commits on Aug 1, 2024

  1. First draft of non-stationary parameter estimation. Code unclean for now

    @Sci-pio
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  2. Adding control over confidence level for parameters + updating docume… 

    …ntation
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Commits on Aug 7, 2024

  1. Merge branch 'main' into extremes-wrapper

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  2. docstring cleanup

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  3. add import warning

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  4. wip - configure pooch

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Commits on Aug 8, 2024

  1. Try/catch mechanism to return NANs when julia error occurs

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  2. WIP - simplify testing data management, integrate pytest-xdist support

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Commits on Aug 9, 2024

  1. configure testing data for extremes

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  2. update numpydoc

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  3. address warnings

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  4. fix pooch creation

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  5. add xfail on CI, add pooch intersphinx mapping

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  6. use autodoc mock, pin some dependencies, add _data folder to .gitignore

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Commits on Aug 12, 2024

  1. update warnings, update stackstac version

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  2. update numpy type

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  3. add julia and non-julia builds, fix stackstac call

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  4. Merge branch 'main' into extremes-wrapper

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  5. add exception handling for notebook

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Commits on Aug 15, 2024

  1. Linting fix part 2

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  2. Updating test_extremes

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Commits on Aug 22, 2024

  1. added return_level analysis

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Commits on Aug 23, 2024

  1. Some finishing touches to the return level functionnality before leav… 

    …ing. Good luck everyone!
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Commits on Oct 8, 2024

  1. merge main changes, refactor textdata fetching logic

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  2. add missing os keys

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  3. minor adjustments

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Commits on Oct 22, 2024

  1. merge main

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Commits on Oct 23, 2024

  1. Merge remote-tracking branch 'origin/extremes-wrapper' into nonstatio… 

    …nary_extreme_value_analysis
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  2. testing the PR view does not show recent commits of a merge

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  3. Deleting the test

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Commits on Oct 25, 2024

  1. Added support for Pareto and multiple changes to compute all the para… 

    …meters in a single operation (for now, works gevfit)
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Commits on Oct 26, 2024

  1. return levels and fit works for all the distr and methods

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  2. An undefined parameter was deleted

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Commits on Oct 28, 2024

  1. Bayes method was added to return levele estimation function

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Commits on Oct 29, 2024

  1. Return NaN in the right position when using return_level

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  2. Mask values in the fit data where covariates contain NaN entries

    @ospinajulian
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  3. Merge branch 'main' into nonstationary_extreme_value_analysis

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Commits on Oct 31, 2024

  1. return_level parallelization

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  2. fit parallelized

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Commits on Nov 1, 2024

  1. Adjusted GEV functions to return -shape for consistency with xclim

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Commits on Nov 4, 2024

  1. runtimewarning to userwarning and sanity check for nparam > len(data)

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  2. Merge branch 'main' into extremes-wrapper

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  3. First draft of non-stationary parameter estimation. Code unclean for now

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  4. Adding control over confidence level for parameters + updating docume… 

    …ntation
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  5. Try/catch mechanism to return NANs when julia error occurs

    @Sci-pio @ospinajulian
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  6. Linting fix part 2

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  7. added return_level analysis

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  8. Some finishing touches to the return level functionnality before leav… 

    …ing. Good luck everyone!
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  9. testing the PR view does not show recent commits of a merge

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  10. Deleting the test

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  11. Added support for Pareto and multiple changes to compute all the para… 

    …meters in a single operation (for now, works gevfit)
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  12. return levels and fit works for all the distr and methods

    @ospinajulian
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  13. An undefined parameter was deleted

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  14. Bayes method was added to return levele estimation function

    @ospinajulian
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  15. Return NaN in the right position when using return_level

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  16. Mask values in the fit data where covariates contain NaN entries

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  17. return_level parallelization

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  18. fit parallelized

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  19. Adjusted GEV functions to return -shape for consistency with xclim

    @ospinajulian
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  20. runtimewarning to userwarning and sanity check for nparam > len(data)

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  21. Merge branch 'nonstationary_extreme_value_analysis_copy' of https://g… 

    …ithub.com/hydrologie/xhydro into nonstationary_extreme_value_analysis_copy
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  22. test

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  23. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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Commits on Nov 8, 2024

  1. All the fit functions were combine in extremefit_param and extremefit… 

    …_rtnlv
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    ospinajulian committed Nov 8, 2024
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Commits on Nov 12, 2024

  1. Added unit tests

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    ospinajulian committed Nov 12, 2024
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  2. attrs were modified

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    ospinajulian committed Nov 12, 2024
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Commits on Nov 18, 2024

  1. _fit_model was wadded to be used in fit() and return_level()

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    ospinajulian committed Nov 18, 2024
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  2. Merge branch 'main' into extremes-wrapper

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    ospinajulian authored Nov 18, 2024
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Nov 18, 2024
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Commits on Nov 19, 2024

  1. Added @pytest.mark.skipif() to the test when julia is not find

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    ospinajulian committed Nov 19, 2024
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  2. @pytest.mark.skipif() was deleted from the tests

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    ospinajulian committed Nov 19, 2024
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  3. add juliacall >=0.9.23

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    ospinajulian committed Nov 19, 2024
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  4. juliacall in pyptoject.toml

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    ospinajulian committed Nov 19, 2024
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  5. juliacall >=0.9.20

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    ospinajulian committed Nov 19, 2024
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  6. pyjuliacall >=0.9.20

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    ospinajulian committed Nov 19, 2024
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  7. Change the use of locals() for a dictionary to avoid problems in the … 

    …github tests
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    ospinajulian committed Nov 19, 2024
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  8. The notebook was executed again

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    ospinajulian committed Nov 19, 2024
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