Skip to content

Issues: geronimp/graftM

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

38 Open 66 Closed
38 Open 66 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Difference between search_otu_table and combined_count_table. Multiple hmm searches.
#285 opened Aug 29, 2024 by robcli
low number of reads detected
#284 opened Mar 1, 2024 by rzhan186
GraftM graft on big metagenome error
#277 opened Apr 26, 2022 by steff1088
4
working with non-gene sequences
#269 opened Jul 19, 2021 by bakeronit
Issue running graftm create using docker
#268 opened Oct 28, 2020 by erins1
6
error using decoy_database with hmmsearch+diamond
#267 opened Jun 19, 2020 by yboesch
graftM create error
#265 opened May 11, 2020 by adityabandla
6
Error: TC bit thresholds unavailable on model graftmrzdqhx.aln
#264 opened Dec 23, 2019 by sarah872
2
graft_package_version error on custom GraftM package
#259 opened Mar 15, 2019 by fletchec99
10
KeyError on split sequence?
#255 opened Jul 10, 2018 by maxemil
Input Reads or Bins
#253 opened Jun 27, 2018 by colbyga
3
graftM create_why error in building tree?
#249 opened Apr 15, 2018 by snmrna
6
HMMsearch + DIAMOND bug
#236 opened May 5, 2017 by ljmmm
3
taxonomy file empty bug
#234 opened Apr 25, 2017 by tv195
graftm tree decorate not working when given undecorated tree? bug
#227 opened Sep 23, 2016 by wwood
multijplace enhancement
#211 opened May 23, 2016 by wwood
rereplication of alignments
#205 opened May 9, 2016 by wwood
1
create does not remove extraneous taxonomy bug
#204 opened May 8, 2016 by wwood
1
GraftM needs tests for classification enhancement
#200 opened May 4, 2016 by geronimp
refactoring of Run enhancement
#199 opened May 4, 2016 by wwood
logging options repeated in bin/graftM code
#196 opened May 3, 2016 by wwood
create chokes when provided an annotated tree and hmm but no alignment
#191 opened May 2, 2016 by wwood
Archaea specific models in create
#186 opened Apr 4, 2016 by geronimp
resume/continue job
#182 opened Feb 11, 2016 by xvazquezc
4
graftm create --graftm_package TypeError
#179 opened Jan 31, 2016 by wwood
ProTip! Updated in the last three days: updated:>2024-10-27.