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This PR upgrades Pybind11 to version 2.13.1.
The main reason for this is to support numpy v2.0.0 which was recently released. Using an older version of pybind11 causes a segmentation fault when running the python tests.
NOTE: This should be an easy review since only the Pybind11 files are copied over from the latest release version.
Update: I fixed a bug in Pybind11 (see the PR) and instead of waiting for a new release, I made a similar fix here.