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52 Open 83 Closed
52 Open 83 Closed
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Issues list

dbNSFP list order is not maintained
#188 opened May 23, 2024 by ibosdet
Data source: AlphaMissense data source new data source can be added.
#183 opened Jan 22, 2024 by newgene
report all REVEL scores from dbNSFP
#179 opened Nov 15, 2023 by andrewsu
@everaldorodrigo
1
Cannot aggregate by "chrom" field
#167 opened Aug 3, 2023 by ravila4
docm field formatting
#166 opened Jul 21, 2023 by colleenXu
Missing gnomAD data
#165 opened Jun 29, 2023 by gcheung-SF
MyVariantDifferManager object has no attribute release_note
#160 opened Nov 14, 2022 by erikyao
@erikyao
Investigate the warning of Can't find information for target collection 'superhot_hg19_xxx'
#159 opened Nov 14, 2022 by erikyao
@erikyao
ssl error in logger
#158 opened Nov 14, 2022 by erikyao
@erikyao
fix outdated command "rebuild_cache"
#156 opened Nov 1, 2022 by erikyao
@erikyao
1
src/bin code cleaning
#151 opened Oct 24, 2022 by erikyao
@erikyao
post-merge errors of superhot builds
#150 opened Oct 12, 2022 by erikyao
@erikyao
hub-generated release note from an incremental release is not complete
#147 opened Jul 1, 2022 by erikyao
@erikyao
update CADD data source data source new data source can be added.
#145 opened May 27, 2022 by newgene
@erikyao
2
test_others.py timeout
#143 opened Mar 14, 2022 by erikyao
@newgene @erikyao
1
Use a known normalization algorithm in utils.hgvs._normalized_vcf function
#140 opened Jan 5, 2022 by erikyao
@newgene @erikyao
MNVs (multi-nucleotide variants) in dbSNP missing start, end positions
#138 opened Dec 9, 2021 by erikyao
@erikyao
Complete UniProt variant data source data source new data source can be added.
#131 opened Aug 16, 2021 by newgene
ClinVar Protein HGVS not being returned correctly? bug
#128 opened Jul 22, 2021 by kkrysiak
1
@erikyao
3
Evaluate and potentially switch to use ClinVar's new VCV xml dump file data source new data source can be added. hub
#127 opened Jul 21, 2021 by newgene
@erikyao
1
Add MD5 checksum utility enhancement
#125 opened Jun 25, 2021 by erikyao
@erikyao
2
Accelerate SnpeffPostUpdateUploader enhancement
#121 opened Apr 29, 2021 by erikyao
@newgene @erikyao
Test BaseVariantIndexer.post_index() method
#114 opened Apr 8, 2021 by erikyao
@newgene @erikyao
Selecting HGVS annotation of canonical transcript
#113 opened Apr 7, 2021 by hkarakurt8742
3
Switch to SnpEff 5.0 enhancement
#112 opened Mar 31, 2021 by erikyao
@erikyao
ProTip! Find all open issues with in progress development work with linked:pr.