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fix obs and var defaults to return all values if none spec'd #676

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merged 1 commit into from
Oct 30, 2024
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fix obs and var defaults to return all values if none spec'd #676

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6 changes: 2 additions & 4 deletions src/tiledb/cloud/soma/mapper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -224,8 +224,6 @@ def build_collection_mapper_workflow_graph(
assert isinstance(task_graph_name, str)

args_dict = args_dict or {}
obs_attrs = obs_attrs or []
var_attrs = var_attrs or []

# Create context that enables faster array open
# cfg_dict = cfg_dict or {}
Expand Down Expand Up @@ -356,9 +354,9 @@ def experiment_to_anndata_slice(
query = exp.axis_query(measurement_name, obs_query=obs_query, var_query=var_query)

column_names = {}
if obs_attrs is not None:
if obs_attrs:
column_names["obs"] = obs_attrs
if var_attrs is not None:
if var_attrs:
column_names["var"] = var_attrs

adata = query.to_anndata(X_name=X_layer_name, column_names=column_names)
Expand Down
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