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requirements.txt
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requirements.txt
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setuptools==68.0
setuptools_rust==1.9.0
stream-zip==0.0.47
more-itertools==8.12.0
beautifulsoup4==4.10.0
bgzip==0.5.0
biopython==1.84
cdot==0.2.26
celery==5.3.6
ConfigArgParse==1.5.3
coreapi==2.3.3
crispy-bootstrap4==2022.1
cyvcf2==0.30.28
deprecation==2.1.0
Django==4.2.15
django-amazon-ses==4.0.1
django-auditlog==3.0.0
django_autocomplete_light==3.9.1
django-avatar==8.0.0
django_cache_memoize==0.1.10
django-compressor==4.3.1
django_crispy_forms==2.0
crispy-bootstrap4==2022.1
django_dag==1.4.3
django_datetime_utc==1.0.3
django_debug_toolbar==4.2.0
django_downloadview==2.3.0
django-extensions==3.1.5
django-geojson==3.2.0
django_glrm==1.1.3
django-guardian==2.4.0
django_htmlmin==0.11.0
django-js-reverse==0.10.2
django_json_widget==2.0.1
django-leaflet==0.28.2
django_model_utils==4.2.0
django-postgres-extra==2.0.5
django_recaptcha==4.0.0
django-registration-redux==2.9
django_termsandconditions==2.0.12
django-reversion-compare==0.15.0
djangorestframework==3.15.2
easy_thumbnails==2.8.1
fontawesomefree==6.4.0
git+https://github.com/davmlaw/django-jfu#egg=django-jfu
git+https://github.com/davmlaw/django-messages/#egg=django-messages
git+https://github.com/davmlaw/django-starfield#egg=django_starfield
git+https://github.com/SACGF/hgvs#egg=pyhgvs
git+https://github.com/biocommons/hgvs#egg=hgvs
git+https://github.com/dridk/PyVCF3#egg=pyvcf3
gunicorn
HTSeq==2.0.8
ijson==3.1.4
ipython==8.15
kombu==5.3.7
levenshtein==0.20.9
lxml==5.1.0
Markdown==3.2
matplotlib==3.9.2
mozilla_django_oidc==2.0.0
nameparser==1.1.1
networkx==2.7.1
nltk==3.8
numpy==1.25
oauthlib==3.1.0
pandas==1.4.0
pronto==2.5.7
psycopg2==2.9.9
# required by macOS
# psycopg2-binary==2.9.9
pypdf==4.0.2
pysam==0.22.1
python_dateutil==2.8.2
redis==3.5.3
reportlab==3.6.13
requests==2.32.0
requests_oauthlib==1.3.1
rollbar==0.16.3
scipy==1.14.1
simplejson==3.18.0
sqlparse==0.5.0
toposort==1.7
Unidecode==1.3.2
# below are only required for environments directly integrating with s3
# separate to django-amazon-ses
boto3==1.26.90
django-storages==1.12.3
django_threadlocals==0.10
pyspellchecker==0.6.3
frozendict==2.4.2
pydantic==2.4.0
deepdiff==6.5.0
# required for omni importer
openpyxl==3.1.2
# only used indirectly, but be explicit for the sake of dependencies
jmespath==1.0.1