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Tools: miscellaneous recommendations

Tessa Pierce edited this page Jan 12, 2016 · 2 revisions
The group is constantly getting lots of recommendations for programs you can use.

What makes a good recommendation?

  • tool is free
  • tool is open-source
  • tool is not free, but boasts remarkably better performance than free options

When possible, we will work recommendations directly into the resource topics in the sidebar, but for info-rich presentations, please see below.

Tristan Carland's Presentation from Jan 11, 2016 (linked here)

  • packed with goodies for phylogenetics, variant analysis, graphics, project management!

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Resource Topics

Assembly/Mapping
Population genetics
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[Genome] Web analysis portals
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Computing tools & techniques
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  • Data Quality check, trimming, filtering
  • Clustering methods and visualization
  • Visualization methods
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