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Jessica Blanton edited this page Jan 26, 2016 · 4 revisions

We're gathering useful info all the time that we hope are useful to the community! At the moment most of these pages are works in progress.

  • [Using Diamond for BLAST-like searches](Using Diamond for BLAST-like searches)
  • The Shell, by ctb
  • Coding basics
  • [Using the Triton cluster](Using the Triton cluster)
    • XSEDE
  • [Computing resources](Computing resources)
    • Amazon Web Services AWS

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UCSD community resources and networks

Resource Topics

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Assembly/Mapping
Population genetics
Phylogenetics
Annotation
Microbial diversity
Microbial genome analysis
[Genome] Web analysis portals
Expression analysis
Computing tools & techniques
  • Markdown documents
  • Digital notebooks - jupyter (ipython)
  • Languages: coding basics
  • General computing
  • Data management
  • Bioinformatics wrapper pkgs
  • Data Quality check, trimming, filtering
  • Clustering methods and visualization
  • Visualization methods
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