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R Resources
The latest version of R and associated packages are distributed through CRAN.
R can be run through the command line on UNIX/LINUX, Mac, and Windows machines, however the most widely used interface is via RStudio.
CRAN provides a good list of contributed documents and reference cards here.
Patrick Burns has three good books on R programming and programming techniques in general here
Two good recommended textbooks that are worth working through for R beginners are:
- "R In a Nutshell" by Joseph Adler (Amazon or PDF of first edition)
- "The Art of R Programming" by Norman Matloff (Amazon or PDF)
There are a series of R-Help maillists and special interest groups that can be useful to subscribe to or search the archives of.
R-Bloggers is a blog of news, tips, and tutorials that is updated regularly. There is also a maillist and RSS feed so you can always stay in touch.
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Population Genetics
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Genomics
- Meeting Schedule and Speakers
- UCSD Bioinformatics courses
- Workshops
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The BUG project
- Meetup schedule
- How to write tutorials
- How to write topic wikipages
- Logo competition!
- Markdown documents
- Digital notebooks - jupyter (ipython)
- Languages: coding basics
- General computing
- Data management
- Bioinformatics wrapper pkgs
- Data Quality check, trimming, filtering
- Clustering methods and visualization
- Visualization methods