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R Resources

Eric Archer edited this page Feb 7, 2016 · 4 revisions

Software

The latest version of R and associated packages are distributed through CRAN.

R can be run through the command line on UNIX/LINUX, Mac, and Windows machines, however the most widely used interface is via RStudio.

Tutorials

CRAN provides a good list of contributed documents and reference cards here.

Patrick Burns has three good books on R programming and programming techniques in general here

Two good recommended textbooks that are worth working through for R beginners are:

Help

There are a series of R-Help maillists and special interest groups that can be useful to subscribe to or search the archives of.

R-Bloggers is a blog of news, tips, and tutorials that is updated regularly. There is also a maillist and RSS feed so you can always stay in touch.

Genetics Packages

  • Population Genetics

  • Genomics

About Us

Events

UCSD community resources and networks

Resource Topics

Assembly/Mapping
Population genetics
Phylogenetics
Annotation
Microbial diversity
[Genome] Web analysis portals
Expression analysis
Computing tools & techniques
  • Markdown documents
  • Digital notebooks - jupyter (ipython)
  • Languages: coding basics
  • General computing
  • Data management
  • Bioinformatics wrapper pkgs
  • Data Quality check, trimming, filtering
  • Clustering methods and visualization
  • Visualization methods
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