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add precursor ppm accuracy and precision #254

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merged 7 commits into from
Apr 19, 2024
Merged

add precursor ppm accuracy and precision #254

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0f30577
add precursor ppm accuracy and precision
cbielow Apr 8, 2024
a998c57
apply suggestions from review
cbielow Apr 12, 2024
dedef48
change name to common scheme
cbielow Apr 14, 2024
61fb70c
resolve merge conflicts
cbielow Apr 14, 2024
3ca42fd
Merge branch 'master' into precursor_acc
mobiusklein Apr 19, 2024
7876209
Merge branch 'master' into precursor_acc
mobiusklein Apr 19, 2024
5a6860a
Version Bump
mobiusklein Apr 19, 2024
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40 changes: 37 additions & 3 deletions psi-ms.obo
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
format-version: 1.2
data-version: 4.1.146
date: 05:04:2024 13:22
saved-by: Joshua Klein
data-version: 4.1.147
date: 08:04:2024 13:29
saved-by: Chris Bielow
auto-generated-by: OBO-Edit 2.3.1
import: http://purl.obolibrary.org/obo/pato.obo
import: http://purl.obolibrary.org/obo/stato.owl
Expand Down Expand Up @@ -2893,6 +2893,16 @@ name: laser desorption ionization
def: "The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material." [PSI:MS]
is_a: MS:1000247 ! desorption ionization

[Term]
id: MS:1000394
name: precision
def: "Precision is the degree of how close repeated measurements are to each other. This can, for example, be expressed using the standard deviation." [PSI:MS]
comment: See MS:1000014 for the related term of accuracy.
is_a: MS:1000480 ! mass analyzer attribute
relationship: has_units MS:1000040 ! m/z
relationship: has_units UO:0000169 ! parts per million
relationship: has_value_type xsd:float ! The allowed value-type for this CV term

[Term]
id: MS:1000395
name: liquid secondary ionization
Expand Down Expand Up @@ -24086,6 +24096,30 @@ relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive
relationship: has_order MS:1002109 ! lower score better
synonym: "PG: Contaminants" NARROW []

[Term]
id: MS:4000178
name: mean of precursor ppm deviation
def: "The mean of the distribution of observed precursor mass accuracies (MS:4000072) [in ppm] of identified MS2 spectra after user-defined acceptance criteria (FDR) are applied" [PSI:MS]
is_a: MS:4000003 ! single value
relationship: has_metric_category MS:4000008 ! ID based metric
relationship: has_metric_category MS:4000021 ! MS1 metric
relationship: has_value_concept STATO:0000401 ! sample mean
relationship: has_value_concept MS:1000014 ! accuracy
relationship: has_units UO:0000169 ! parts per million
relationship: has_value_type xsd:float ! The allowed value-type for this CV term

[Term]
id: MS:4000179
name: sigma of precursor ppm deviation
def: "The standard deviation of the distribution of observed precursor mass accuracies (MS:4000072) [in ppm] of identified MS2 spectra after user-defined acceptance criteria (FDR) are applied" [PSI:MS]
is_a: MS:4000003 ! single value
relationship: has_metric_category MS:4000008 ! ID based metric
relationship: has_metric_category MS:4000021 ! MS1 metric
relationship: has_value_concept STATO:0000237 ! standard deviation
relationship: has_value_concept MS:1000394 ! precision
relationship: has_units UO:0000169 ! parts per million
relationship: has_value_type xsd:float ! The allowed value-type for this CV term

[Term]
id: PEFF:0000001
name: PEFF CV term
Expand Down
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