Skip to content

Tool Inventory

Sam Minot edited this page Aug 17, 2022 · 2 revisions

If you are using gig-map for the first time, start with our guide to Getting Started.

Downloading Genomes and Genes

While gig-map can be used to analyze genes and genomes from any source, it also provides a utility for downloading these files directly from NCBI.

Downloading Genomes and Genes

Deduplicating Genes

To combine a collection of genes from multiple genomes, we must combine any duplicated genes.

Deduplicating Genes

Aligning Genes to Genomes

Identify which genes can be found within a set of genomes, generating all of the files needed to render a useful map.

Aligning Genes to Genomes

Rendering Displays

Render an interactive genes-in-genomes map, overlaying useful annotations and providing an interactive HTML interface.

Rendering Displays

Searching Genomes for Genes

Quickly identify which genomes from a collection may contain a set of genes of interest.

Searching Genomes