Handle lines without logs #368
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| name: Test gig-map | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Setup BATS | |
| uses: mig4/setup-bats@v1 | |
| with: | |
| bats-version: 1.2.1 | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-java@v2 | |
| with: | |
| distribution: 'temurin' # See 'Supported distributions' for available options | |
| java-version: '17' | |
| - name: Install Nextflow | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: set up Python3 | |
| uses: actions/setup-python@v3 | |
| - name: Run tests | |
| working-directory: test_data | |
| run: bash run_tests.sh |