Releases: DessimozLab/pyham
Releases · DessimozLab/pyham
v1.2.0
FIX:
- Remove unnecessary files from git repo
- replace outdated nosetests -> pytest as test running
IMPROVEMENTS:
- Improve handling of HOG IDs in pyham. HOG objects use "hog_id" or "og" attribute
from orthoxml to show objects, and also include the taxonomic range.
- LOFT attribute will be loaded for gene elements if assigned in orthoxml.
Full Changelog: v1.1.11...v1.2.0
Release v1.1.11
What's Changed
- added quoted_node_names option to taxonomy class to fix newick import error by @ethanbass
- Fixes parsing problem with directly nested paralogGroup nodes in orthoxml by @alpae
New Contributors
- @ethanbass made their first contribution in #8
Release 1.1.10
v1.1.10 v 1.1.10
1.1.6
1.1.5
1.1.3
1.1.1
PhyloXML compatibility and VisTool Enhancements
1.1.0 FT fix