Skip to content

Bump version: 2.0.0 → 2.0.1 #85

Bump version: 2.0.0 → 2.0.1

Bump version: 2.0.0 → 2.0.1 #85

Workflow file for this run

name: Python package
on: [ push , pull_request]
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest
pip install .
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --exit-zero --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Download test omamer db file
run: |
wget -O Homininae.h5 'https://omabrowser.org/All/Homininae.h5'
- name: Download sample fasta file
run: |
wget -O human_sample.fa 'https://rest.uniprot.org/uniprotkb/search?format=fasta&query=%28%28proteome%3AUP000005640%29%29&size=200'
head -n 10 human_sample.fa
- name: Test
run: |
ls -l
omamer search --db Homininae.h5 --query human_sample.fa --out human_sample.omamer
cat human_sample.omamer