patch idmapper

DessimozLab · Aug 29, 2024 · 39e9f20 · 39e9f20
1 parent eb4db74
commit 39e9f20
Showing 1 changed file with 7 additions and 0 deletions.
diff --git a/src/HogProf/profiler.py b/src/HogProf/profiler.py
@@ -101,6 +101,13 @@ def __init__(self,lshforestpath = None, hashes_h5=None, mat_path= None, oma = Fa
 					self.tax_filter = [ self.idmapper[tax] for tax in taxfilter ]
 				if taxmask:
 					self.tax_mask = self.idmapper[taxmask]
+			else:
+				self.idmapper = None
+				self.tax_filter = taxfilter
+				self.tax_mask = taxmask
+				self.tree_string = self.tree.write(format=1)
+
+
 			self.taxaIndex, self.ReverseTaxaIndex = files_utils.generate_taxa_index(self.tree)
 			self.treeweights = hashutils.generate_treeweights(self.tree , self.taxaIndex , None, None )
 			self.swap2taxcode = swap2taxcode