#146 and #125 gis functions in separate file and ground floor height updating

.gitignore

@@ -122,6 +122,8 @@ cache
 /examples/FIAT_database
 hydromt_fiat/data/damage_functions/flooding/AllDDF_HAZUS_fractions.xlsx
 hydromt_fiat/data/damage_functions/flooding/~$AllDDF_HAZUS_fractions.xlsx
+examples/data/update_ground_floor_height/test_update_ground_floor_height_points
+examples/data/update_ground_floor_height/test_update_ground_floor_height_polygons
 examples/data/building_footprints/fiat_model_bfs
 examples/data/aggregation_zones_example/aggregation_test_1_output
 examples/data/aggregation_zones_example/aggregation_test_2_output

examples/data/hydromt_fiat_catalog_USA.yml

@@ -0,0 +1,45 @@
+
+NSI:
+    path: "https://nsi.sec.usace.army.mil/nsiapi/structures?fmt=fc"
+    data_type: GeoDataFrame
+    driver: vector
+    crs: 4326
+    translation_fn: "attribute_linking/NSI_attributes_to_FIAT.json"
+    meta:
+      category: exposure
+
+default_vulnerability_curves:
+    path: damage_functions/flooding/Hazus_IWR_curves.csv
+    data_type: DataFrame
+    driver: csv
+    meta:
+      category: vulnerability
+      source: HAZUS SQL database, USACE-IWR and FEMA expert elicitation curves. The source of these curves is the Draft Report Nonresidential Flood Depth-Damage Functions Derived from Expert Elicitation, April 2009, Revised 2013. FEMA Contract Number HSFEHQ-06-D-0162. Task Order HSFEHQ-08-J-0014. Not for distribution, but data shared by USACE.
+
+jrc_vulnerability_curves:
+    path: damage_functions/flooding/JRC_damage_functions.xlsx
+    data_type: DataFrame
+    driver: xlsx
+    meta:
+      category: vulnerability
+
+hazus_max_potential_damages:
+    path: max_potential_damages/damage_values_fema_hazus-inventory-technical-manual-4.2.3.xlsx
+    data_type: DataFrame
+    driver: xlsx
+    meta:
+      category: vulnerability
+
+social_vulnerability:
+    path: social_vulnerability/census_vulnerability_data_codebook.xlsx
+    data_type: DataFrame
+    driver: xlsx
+    meta:
+      category: social_vulnerability
+
+default_hazus_iwr_linking:
+  path: vulnerability_linking/default_hazus_iwr_curve_linking.csv
+  data_type: DataFrame
+  driver: csv
+  meta:
+    category: vulnerability

examples/data/update_ground_floor_height/fiat_model/settings.toml

@@ -0,0 +1,20 @@
+[global]
+crs = "epsg:4326"
+
+[output]
+path = "output"
+
+[output.csv]
+name = "output.csv"
+
+[output.geom]
+name1 = "spatial.gpkg"
+
+[vulnerability]
+file = "./vulnerability/vulnerability_curves.csv"
+scale = 0.1
+
+[exposure.geom]
+csv = "./exposure/exposure.csv"
+crs = "EPSG:4326"
+file1 = "./exposure/building_points.gpkg"

examples/data/update_ground_floor_height/fiat_model/vulnerability/vulnerability_curves.csv

@@ -0,0 +1,32 @@
+#UNIT=feet
+#METHOD,max,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean,mean
+water depth [feet],AGR1,COM1,COM10,COM2,COM3,COM4,COM5,COM6,COM7,COM8,COM9,EDU1,GOV1,GOV2,IND1,IND2,IND3,IND4,IND5,IND6,REL1,RES1-1SNB,RES1-1SWB,RES1-2SNB,RES1-2SWB,RES1-3SNB,RES1-3SWB,RES2,RES3A,RES3B,RES3C,RES3D,RES3E,RES3F,RES4,RES5,RES6
+-4.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.07,0.0,0.04,0.0,0.03,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
+-3.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.07,0.0,0.04,0.0,0.03,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
+-2.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.07,0.0,0.08,0.0,0.06,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
+-1.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.11,0.0,0.14,0.0,0.1,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
+0.0,0.0,0.01,0.0,0.0,0.0,0.02,0.0,0.0,0.02,0.01,0.0,0.0,0.0,0.0,0.01,0.01,0.0,0.0,0.0,0.0,0.0,0.18,0.17,0.11,0.19,0.05,0.12,0.11,0.12,0.12,0.12,0.12,0.12,0.12,0.0,0.0,0.0
+1.0,0.06,0.09,0.03,0.05,0.09,0.11,0.11,0.0,0.11,0.09,0.02,0.05,0.05,0.07,0.1,0.09,0.13,0.1,0.13,0.22,0.1,0.22,0.21,0.12,0.21,0.08,0.14,0.44,0.25,0.25,0.25,0.25,0.25,0.25,0.03,0.07,0.07
+2.0,0.11,0.14,0.05,0.08,0.12,0.16,0.11,0.0,0.12,0.11,0.04,0.07,0.08,0.1,0.12,0.14,0.14,0.14,0.14,0.31,0.11,0.25,0.29,0.14,0.26,0.12,0.2,0.63,0.5,0.5,0.5,0.5,0.5,0.5,0.05,0.1,0.1
+3.0,0.15,0.16,0.06,0.11,0.13,0.22,0.12,0.2,0.13,0.12,0.05,0.09,0.13,0.11,0.15,0.17,0.19,0.18,0.19,0.37,0.11,0.28,0.34,0.18,0.29,0.17,0.25,0.73,0.75,0.75,0.75,0.75,0.75,0.75,0.06,0.14,0.14
+4.0,0.19,0.18,0.07,0.13,0.16,0.28,0.13,0.25,0.14,0.14,0.05,0.09,0.14,0.12,0.19,0.22,0.22,0.22,0.22,0.43,0.12,0.3,0.38,0.2,0.34,0.19,0.31,0.78,1.0,1.0,1.0,1.0,1.0,1.0,0.07,0.15,0.15
+5.0,0.25,0.2,0.08,0.16,0.19,0.35,0.15,0.3,0.16,0.16,0.05,0.1,0.14,0.15,0.22,0.26,0.25,0.26,0.25,0.47,0.12,0.31,0.43,0.22,0.39,0.22,0.36,0.79,1.0,1.0,1.0,1.0,1.0,1.0,0.09,0.15,0.15
+6.0,0.3,0.23,0.1,0.19,0.22,0.38,0.17,0.35,0.17,0.18,0.06,0.11,0.15,0.17,0.26,0.3,0.28,0.34,0.28,0.5,0.13,0.4,0.5,0.24,0.44,0.24,0.38,0.81,1.0,1.0,1.0,1.0,1.0,1.0,0.12,0.16,0.16
+7.0,0.35,0.26,0.13,0.22,0.25,0.41,0.19,0.4,0.18,0.2,0.08,0.13,0.17,0.2,0.3,0.32,0.3,0.41,0.3,0.54,0.14,0.43,0.5,0.26,0.5,0.25,0.41,0.82,1.0,1.0,1.0,1.0,1.0,1.0,0.14,0.18,0.18
+8.0,0.41,0.3,0.17,0.25,0.28,0.44,0.22,0.43,0.2,0.22,0.1,0.15,0.19,0.23,0.35,0.35,0.33,0.42,0.33,0.57,0.14,0.43,0.54,0.3,0.55,0.3,0.44,0.83,1.0,1.0,1.0,1.0,1.0,1.0,0.18,0.2,0.2
+9.0,0.46,0.34,0.21,0.29,0.32,0.47,0.24,0.47,0.22,0.26,0.12,0.17,0.22,0.27,0.39,0.37,0.34,0.42,0.34,0.61,0.15,0.45,0.55,0.34,0.57,0.35,0.48,0.84,1.0,1.0,1.0,1.0,1.0,1.0,0.21,0.23,0.23
+10.0,0.51,0.38,0.25,0.32,0.35,0.5,0.28,0.5,0.24,0.29,0.15,0.2,0.26,0.31,0.42,0.39,0.36,0.45,0.36,0.63,0.17,0.46,0.55,0.38,0.59,0.38,0.5,0.85,1.0,1.0,1.0,1.0,1.0,1.0,0.26,0.26,0.26
+11.0,0.57,0.42,0.3,0.37,0.39,0.54,0.31,0.53,0.27,0.33,0.2,0.24,0.31,0.35,0.48,0.43,0.39,0.47,0.39,0.64,0.19,0.47,0.57,0.39,0.61,0.39,0.52,0.86,1.0,1.0,1.0,1.0,1.0,1.0,0.31,0.3,0.3
+12.0,0.63,0.47,0.35,0.41,0.43,0.57,0.34,0.55,0.3,0.37,0.24,0.28,0.37,0.4,0.5,0.46,0.4,0.49,0.4,0.65,0.24,0.47,0.58,0.4,0.63,0.4,0.54,0.88,1.0,1.0,1.0,1.0,1.0,1.0,0.36,0.34,0.34
+13.0,0.7,0.51,0.41,0.45,0.47,0.59,0.37,0.57,0.34,0.41,0.29,0.33,0.44,0.44,0.51,0.48,0.42,0.5,0.42,0.67,0.3,0.49,0.6,0.42,0.65,0.42,0.56,0.89,1.0,1.0,1.0,1.0,1.0,1.0,0.41,0.38,0.38
+14.0,0.75,0.55,0.47,0.49,0.5,0.62,0.4,0.6,0.37,0.45,0.35,0.39,0.51,0.48,0.53,0.5,0.42,0.5,0.42,0.68,0.38,0.5,0.62,0.43,0.66,0.43,0.57,0.9,1.0,1.0,1.0,1.0,1.0,1.0,0.46,0.42,0.42
+15.0,0.79,0.58,0.52,0.52,0.54,0.66,0.44,0.6,0.41,0.5,0.42,0.45,0.59,0.52,0.54,0.51,0.43,0.5,0.43,0.69,0.45,0.5,0.63,0.44,0.68,0.44,0.59,0.91,1.0,1.0,1.0,1.0,1.0,1.0,0.5,0.47,0.47
+16.0,0.82,0.61,0.58,0.55,0.57,0.68,0.48,0.6,0.44,0.53,0.49,0.52,0.65,0.56,0.55,0.54,0.43,0.5,0.43,0.7,0.52,0.5,0.65,0.45,0.69,0.45,0.61,0.92,1.0,1.0,1.0,1.0,1.0,1.0,0.54,0.52,0.52
+17.0,0.84,0.64,0.65,0.58,0.61,0.7,0.51,0.6,0.48,0.57,0.56,0.59,0.7,0.6,0.55,0.55,0.44,0.5,0.44,0.71,0.58,0.51,0.67,0.47,0.71,0.47,0.63,0.94,1.0,1.0,1.0,1.0,1.0,1.0,0.58,0.57,0.57
+18.0,0.87,0.67,0.71,0.61,0.64,0.72,0.55,0.6,0.51,0.6,0.62,0.64,0.74,0.64,0.56,0.57,0.44,0.5,0.44,0.72,0.64,0.51,0.69,0.48,0.72,0.48,0.65,0.95,1.0,1.0,1.0,1.0,1.0,1.0,0.62,0.62,0.62
+19.0,0.89,0.69,0.76,0.63,0.68,0.74,0.59,0.6,0.54,0.63,0.68,0.69,0.79,0.68,0.56,0.59,0.44,0.5,0.44,0.73,0.69,0.52,0.7,0.49,0.74,0.49,0.67,0.96,1.0,1.0,1.0,1.0,1.0,1.0,0.66,0.67,0.67
+20.0,0.9,0.71,0.81,0.66,0.71,0.76,0.63,0.6,0.56,0.66,0.74,0.74,0.83,0.72,0.57,0.6,0.44,0.5,0.44,0.74,0.74,0.52,0.72,0.5,0.75,0.5,0.69,0.97,1.0,1.0,1.0,1.0,1.0,1.0,0.7,0.72,0.72
+21.0,0.92,0.74,0.86,0.68,0.75,0.77,0.67,0.6,0.59,0.69,0.8,0.79,0.87,0.76,0.57,0.62,0.44,0.5,0.44,0.75,0.78,0.53,0.74,0.52,0.77,0.52,0.71,0.98,1.0,1.0,1.0,1.0,1.0,1.0,0.74,0.77,0.77
+22.0,0.93,0.76,0.91,0.7,0.78,0.78,0.71,0.6,0.61,0.73,0.86,0.84,0.91,0.8,0.57,0.63,0.45,0.5,0.45,0.76,0.82,0.53,0.76,0.53,0.79,0.53,0.73,0.99,1.0,1.0,1.0,1.0,1.0,1.0,0.78,0.82,0.82
+23.0,0.95,0.78,0.96,0.71,0.82,0.79,0.75,0.6,0.64,0.76,0.92,0.89,0.95,0.84,0.58,0.65,0.45,0.5,0.45,0.76,0.85,0.54,0.77,0.54,0.8,0.54,0.75,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.82,0.87,0.87
+24.0,0.96,0.8,1.0,0.73,0.85,0.8,0.79,0.6,0.66,0.78,0.98,0.94,0.98,0.88,0.58,0.66,0.45,0.5,0.45,0.77,0.88,0.54,0.79,0.56,0.82,0.56,0.77,1.0,1.0,1.0,1.0,1.0,1.0,1.0,0.86,0.92,0.92

examples/data/update_ground_floor_height/fiat_model/vulnerability/vulnerability_identifiers.csv

@@ -0,0 +1,38 @@
+,Name,Link,BldgDmgFnID,Occupancy,Source,Description,full_identifier
+0,AGR1,AGR1,616,AGR1 ,USACE - Galveston,"Average Agriculture, structure","616AGR1USACE-GalvestonAverageAgriculture,structure"
+1,COM1,COM1,217,COM1 ,USACE - Galveston,"Average Retail, Structure","217COM1USACE-GalvestonAverageRetail,Structure"
+2,COM10,COM10,543,COM10,USACE - Galveston,"Garage, structure","543COM10USACE-GalvestonGarage,structure"
+3,COM2,COM2,341,COM2 ,USACE - Galveston,"Average wholesale, Structure","341COM2USACE-GalvestonAveragewholesale,Structure"
+4,COM3,COM3,375,COM3 ,USACE - Galveston,"Average Personal & Repair Services, Structure","375COM3USACE-GalvestonAveragePersonal&RepairServices,Structure"
+5,COM4,COM4,431,COM4 ,USACE - Galveston,"Average Prof/Tech Services, Structure","431COM4USACE-GalvestonAverageProf/TechServices,Structure"
+6,COM5,COM5,467,COM5 ,USACE - Galveston,"Bank, Structure","467COM5USACE-GalvestonBank,Structure"
+7,COM6,COM6,474,COM6 ,USACE - Galveston,"Hospital, Structure","474COM6USACE-GalvestonHospital,Structure"
+8,COM7,COM7,475,COM7 ,USACE - Galveston,"Average Medical Office, Structure","475COM7USACE-GalvestonAverageMedicalOffice,Structure"
+9,COM8,COM8,493,COM8 ,USACE - Galveston,"Average Entertainment/Recreation, Structure","493COM8USACE-GalvestonAverageEntertainment/Recreation,Structure"
+10,COM9,COM9,532,COM9 ,USACE - Galveston,"Average theatre, Structure","532COM9USACE-GalvestonAveragetheatre,Structure"
+11,EDU1,EDU1,643,EDU1 ,USACE - Galveston,"Average school, structure","643EDU1USACE-GalvestonAverageschool,structure"
+12,GOV1,GOV1,631,GOV1 ,USACE - Galveston,"Average government services, structure","631GOV1USACE-GalvestonAveragegovernmentservices,structure"
+13,GOV2,GOV2,640,GOV2 ,USACE - Galveston,"Average emergency response, Structure","640GOV2USACE-GalvestonAverageemergencyresponse,Structure"
+14,IND1,IND1,545,IND1 ,USACE - Galveston,"Average heavy industrial, Structure","545IND1USACE-GalvestonAverageheavyindustrial,Structure"
+15,IND2,IND2,559,IND2 ,USACE - Galveston,"Average light industrial, structure","559IND2USACE-GalvestonAveragelightindustrial,structure"
+16,IND3,IND3,575,IND3 ,USACE - Galveston,"Average Food/Drug/Chem, Structure","575IND3USACE-GalvestonAverageFood/Drug/Chem,Structure"
+17,IND4,IND4,586,IND4 ,USACE - Galveston,"Average Metals/Minerals processing, structure","586IND4USACE-GalvestonAverageMetals/Mineralsprocessing,structure"
+18,IND5,IND5,591,IND5 ,USACE - Galveston,"Average High Technology, structure","591IND5USACE-GalvestonAverageHighTechnology,structure"
+19,IND6,IND6,592,IND6 ,USACE - Galveston,"Average Construction, structure","592IND6USACE-GalvestonAverageConstruction,structure"
+20,REL1,REL1,624,REL1 ,USACE - Galveston,"Church, structure","624REL1USACE-GalvestonChurch,structure"
+21,RES1-1SNB,RES1-1SNB,105,RES1 ,FIA,"one floor, no basement, Structure, A-Zone","105RES1FIAonefloor,nobasement,Structure,A-Zone"
+22,RES1-1SWB,RES1-1SWB,106,RES1 ,FIA (MOD.),"one floor, w/ basement, Structure, A-Zone","106RES1FIA(MOD.)onefloor,w/basement,Structure,A-Zone"
+23,RES1-2SNB,RES1-2SNB,107,RES1 ,FIA,"two floors, no basement, Structure, A-Zone","107RES1FIAtwofloors,nobasement,Structure,A-Zone"
+24,RES1-2SWB,RES1-2SWB,108,RES1 ,FIA (MOD.),"two floors, w/ basement, Structure, A-Zone","108RES1FIA(MOD.)twofloors,w/basement,Structure,A-Zone"
+25,RES1-3SNB,RES1-3SNB,109,RES1 ,FIA,"three or more floors, no basement, Structure, A-Zone","109RES1FIAthreeormorefloors,nobasement,Structure,A-Zone"
+26,RES1-3SWB,RES1-3SWB,110,RES1 ,FIA (MOD.),"three or more floors, w/ basement, Structure, A-Zone","110RES1FIA(MOD.)threeormorefloors,w/basement,Structure,A-Zone"
+27,RES2,RES2,189,RES2 ,FIA,"Mobile home, structure, A-Zone","189RES2FIAMobilehome,structure,A-Zone"
+28,RES3A,RES3A,659,RES3A,BCAR - Jan 2011,"1to2 Stories, slab - no basement, Coastal A or V Zone","659RES3ABCAR-Jan20111to2Stories,slab-nobasement,CoastalAorVZone"
+29,RES3B,RES3B,660,RES3B,BCAR - Jan 2011,"1to2 Stories, slab - no basement, Coastal A or V Zone","660RES3BBCAR-Jan20111to2Stories,slab-nobasement,CoastalAorVZone"
+30,RES3C,RES3C,660,RES3B,BCAR - Jan 2011,"1to2 Stories, slab - no basement, Coastal A or V Zone","660RES3BBCAR-Jan20111to2Stories,slab-nobasement,CoastalAorVZone"
+31,RES3D,RES3D,660,RES3B,BCAR - Jan 2011,"1to2 Stories, slab - no basement, Coastal A or V Zone","660RES3BBCAR-Jan20111to2Stories,slab-nobasement,CoastalAorVZone"
+32,RES3E,RES3E,660,RES3B,BCAR - Jan 2011,"1to2 Stories, slab - no basement, Coastal A or V Zone","660RES3BBCAR-Jan20111to2Stories,slab-nobasement,CoastalAorVZone"
+33,RES3F,RES3F,660,RES3B,BCAR - Jan 2011,"1to2 Stories, slab - no basement, Coastal A or V Zone","660RES3BBCAR-Jan20111to2Stories,slab-nobasement,CoastalAorVZone"
+34,RES4,RES4,209,RES4 ,USACE - Galveston,"Average Hotel & Motel, structure","209RES4USACE-GalvestonAverageHotel&Motel,structure"
+35,RES5,RES5,214,RES5 ,USACE - Galveston,"Average institutional dormitory, structure","214RES5USACE-GalvestonAverageinstitutionaldormitory,structure"
+36,RES6,RES6,215,RES6 ,USACE - Galveston,"Nursing Home, structure","215RES6USACE-GalvestonNursingHome,structure"