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11 Open 9 Closed
11 Open 9 Closed
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Issues list

Starting tree subtemplates merge with generic mergepoint
#21 opened Sep 5, 2023 by bjoelle
ConstantSitesAlignment enhancement
#20 opened Dec 18, 2022 by walterxie
Deadlock when using Particle Filter
#18 opened Mar 31, 2022 by dreyes17
DocumentationTest fails for some classes
#17 opened Feb 28, 2022 by kche309
PrunedRelaxedClockModel is broken after meanRate is changed to Function bug
#15 opened Jul 29, 2021 by walterxie
4
SimpleRandomTree builds mixed clades under monophyly constraints
#8 opened May 7, 2019 by Anaphory
1
Ancestral state reconstruction for multiple MRCAs with datatype-awareness
#5 opened Nov 15, 2017 by Anaphory
1
Name clash
#4 opened Sep 7, 2016 by gavryushkina
4
PrunedAlignment checks whether taxonSet is null, but it never is.
#3 opened Feb 1, 2016 by Anaphory
1
MCMCMC mechanism for creating multiple chains duplicates the entire model
#2 opened May 27, 2015 by tgvaughan
ThreadedTreeLikelihood on resume can differs between -java and -beagle_GPU
#1 opened Apr 14, 2015 by rbouckaert
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