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Cross_Frequency
Cross_Frequency
 
 
Fast_and_slow_hfos
Fast_and_slow_hfos
 
 
Figures
Figures
 
 
GUI
GUI
 
 
General
General
 
 
Granger
Granger
 
 
HFOs
HFOs
 
 
ICA
ICA
 
 
Ideas_testing
Ideas_testing
 
 
Load_ephys
Load_ephys
 
 
OS_2020
OS_2020
 
 
Object space task
Object space task
 
 
Old_files
Old_files
 
 
Post_SWRd
Post_SWRd
 
 
Pre_midterm
Pre_midterm
 
 
Ripple_detection
Ripple_detection
 
 
Ripple_selection
Ripple_selection
 
 
Spectral_Normalization
Spectral_Normalization
 
 
Stats
Stats
 
 
Thesis_paper
Thesis_paper
 
 
Threshold_Selection
Threshold_Selection
 
 
scripts
scripts
 
 
toiletdrive
toiletdrive
 
 
.gitattributes
.gitattributes
 
 
InitFieldtrip.m
InitFieldtrip.m
 
 
LL_clean.m
LL_clean.m
 
 
NREM_accurate.m
NREM_accurate.m
 
 
NREM_accurate_spectrogram.m
NREM_accurate_spectrogram.m
 
 
NREM_get_ripples.m
NREM_get_ripples.m
 
 
README.md
README.md
 
 
RIPPLES_thesis.m
RIPPLES_thesis.m
 
 
barplot2_ft.m
barplot2_ft.m
 
 
barplot_COH.m
barplot_COH.m
 
 
barplot_GC.m
barplot_GC.m
 
 
between_ripples_21.m
between_ripples_21.m
 
 
brain.png
brain.png
 
 
cohere_bootstrap.m
cohere_bootstrap.m
 
 
cohere_bootstrap_signif_level.m
cohere_bootstrap_signif_level.m
 
 
control_main.m~
control_main.m~
 
 
convert2field.m
convert2field.m
 
 
count_ripples.m
count_ripples.m
 
 
count_ripples.m~
count_ripples.m~
 
 
data_newest_only_ripple_level.m
data_newest_only_ripple_level.m
 
 
epocher.m
epocher.m
 
 
extract_figures.m
extract_figures.m
 
 
find_threshold.m
find_threshold.m
 
 
find_thresholds.m
find_thresholds.m
 
 
gc_no_learning.m
gc_no_learning.m
 
 
generate_nc.m
generate_nc.m
 
 
generate_periodogram.m
generate_periodogram.m
 
 
giphy.gif
giphy.gif
 
 
gui_spindle_hfos_control.m
gui_spindle_hfos_control.m
 
 
hc.m~
hc.m~
 
 
helperCWTTimeFreqPlot.m
helperCWTTimeFreqPlot.m
 
 
justtesting.m
justtesting.m
 
 
map.m
map.m
 
 
net.PNG
net.PNG
 
 
newNORIPPLE_nrem_newest_only_ripple_level.m
newNORIPPLE_nrem_newest_only_ripple_level.m
 
 
newest_only_ripple.m
newest_only_ripple.m
 
 
newest_only_ripple_level.m
newest_only_ripple_level.m
 
 
newest_only_ripple_nl.m
newest_only_ripple_nl.m
 
 
newgetwin.m
newgetwin.m
 
 
nolearn_ripples.m
nolearn_ripples.m
 
 
periodogram_allconditions_noripples.m
periodogram_allconditions_noripples.m
 
 
periodogram_coh_all_areas.m
periodogram_coh_all_areas.m
 
 
periodogram_coherence_wrt_baseline.m
periodogram_coherence_wrt_baseline.m
 
 
periodogram_no_ripples.m
periodogram_no_ripples.m
 
 
periodogram_pca.m
periodogram_pca.m
 
 
periodogram_without_normalization.m~
periodogram_without_normalization.m~
 
 
plot_both.m
plot_both.m
 
 
plot_hfo_xcorr.m
plot_hfo_xcorr.m
 
 
plot_inter_FIXED.m
plot_inter_FIXED.m
 
 
plot_inter_FIXED_10.m
plot_inter_FIXED_10.m
 
 
plot_inter_conditions.m
plot_inter_conditions.m
 
 
plot_inter_conditions_278.m
plot_inter_conditions_278.m
 
 
plot_inter_conditions_3.m
plot_inter_conditions_3.m
 
 
plot_inter_conditions_333.m
plot_inter_conditions_333.m
 
 
plot_no_ripples.m
plot_no_ripples.m
 
 
plot_ripples.m
plot_ripples.m
 
 
raised.png
raised.png
 
 
rat26_parameters.m
rat26_parameters.m
 
 
read_channels_ft.m
read_channels_ft.m
 
 
read_channels_ft_27.m
read_channels_ft_27.m
 
 
read_channels_ft_27_same_threshold.m
read_channels_ft_27_same_threshold.m
 
 
rip_outlier.m
rip_outlier.m
 
 
rip_select.m
rip_select.m
 
 
ripple_amplitude_21.m
ripple_amplitude_21.m
 
 

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Cortico-Hippocampal Network during Memory Consolidation

Project by: Adrián Alemán Zapata

Contact: [email protected] 📫

⚠️ Makes use of functions from the Fieldtrip , OpenEphys, ADRITOOLS and YASA repositories.

Main Folders: 📁

  1. Load_ephys: Converts .continuous channels into downsampled (1kHz) .mat files. 💾
  2. Figures: Main functions for generating paper figures. 📊
  3. Granger: Implementation of Spectral Granger Causality.
  4. Ripple_selection: Detection and selection of ripples.
  5. Pre_midterm: Scripts of tests performed prior to midterm presentation. (Old stuff)
  6. Fast_and_slow_hfos 📄
  7. GUI 🔨

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