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2.2.2

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@juditzador juditzador released this 11 Oct 23:00
· 6 commits to master since this release
2b530ad

What's Changed

General features

  • Optimization can be carried out with the performant Sella optimizer and also allowing the code to be used with any ASE calculator
  • A rewrite of some parts of the reaction_generator where it deals with product generation
  • Increasing robustness when many conformers fail, especially when the first one, which can happen a lot for cations
  • Differentiated thresholds for barrierless reactions and between L1 and L2
  • Allow TS to have a second imaginary frequency smaller than imagfreq_threshold parameter, also when comparing L2 to L1
  • H2 elimination family is extended
  • Rigid distance cutoff for reaction search is a parameter now
  • Fallback values for bondlength thresholds

Ions

  • Handling of cations is improved, especially cation fragments

van der Waals wells

  • Automatic detection using IRC product energies
  • Writing vdW to PESViewer input

Cluster mode

  • Allowing certain calculations on clusters of molecules
  • Detection of hydrogen bonds

VRC-TST

  • 1-D relaxed scan of bonds is implemented with corresponding "high" level of energy evaluations
  • 1-D rigid scans matching the relaxed one is implemented with corresponding "sample" level of energy evaluations
  • Sella-driven optimization of scans, including the prevention of fragment flips for symmetrically equivalent or chemically alternate cases (e.g., resonance stabilization)
  • Automatic placement of pivot points, even when geometrical hints are absent
  • Visualization of correction potential
  • Input writing for VRC-TST code

Some bug fixes

  • Symmetric bond scission's occasional bug
  • Enabling clean end on single well case in pes mode
  • Ozone has correct multiplicity