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ychuest committed Oct 11, 2024
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Expand Up @@ -81,6 +81,7 @@ Awesome-LLMs-meet-genomes is a collection of state-of-the-art, novel, exciting L
### Generic Base Models
| Year | Title | Venue | Paper | Code |
| ---- | ------------------------------------------------------------ | :-----: | :----------------------------------------------------------: | :----------------------------------------------------------: |
| 2024.10 | **Long-range gene expression prediction with token alignment of large language model** | arXiv | [link](https://doi.org/10.48550/arXiv.2410.01858) | - |
| 2024.09 | **dnaGrinder: a lightweight and high-capacity genomic foundation model** | arXiv | [link](https://doi.org/10.48550/arXiv.2409.15697) | - |
| 2024.09 | **Designing realistic regulatory DNA with autoregressive language models** | Genome Research | [link](https://genome.cshlp.org/content/early/2024/09/24/gr.279142.124.abstract) | - |
| 2024.08 | **Understanding the Natural Language of DNA using Encoder-Decoder Foundation Models with Byte-level Precision** | Bioinformatics Advances | [link](https://doi.org/10.1093/bioadv/vbae117) | [link](https://github.itap.purdue.edu/Clan-labs/ENBED) |
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