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ychuest committed Dec 25, 2024
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Expand Up @@ -84,6 +84,7 @@ Awesome-LLMs-meet-genomes is a collection of state-of-the-art, novel, exciting L
### Generic Base Models
| Year | Title | Venue | Paper | Code |
| ---- | ------------------------------------------------------------ | :-----: | :----------------------------------------------------------: | :----------------------------------------------------------: |
| 2024.12 | **EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics** | Genome Biology | [link](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03449-7) | [link](https://github.com/ZjGaothu/EpiGePT) |
| 2024.11 | **VIRALpre: Genomic Foundation Model Embedding Fused with K-mer Feature for Virus Identification** | bioRxiv | [link](https://www.biorxiv.org/content/10.1101/2024.11.12.623150v1.abstract) | - |
| 2024.11 | **BEACON: Benchmark for Comprehensive RNA Tasks and Language Models** | NeurIPS'24 | [link](https://openreview.net/forum?id=q2IeJByeSM#discussion) | [link](https://github.com/terry-r123/RNABenchmark) |
| 2024.11 | **DNA Language Models for RNA Analyses** | ICLR'25 Conference Submission | [link](https://openreview.net/forum?id=TOUrnb1EaG) | - |
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