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A simple plant tissue segmentation workflow (for Phenome Force 2021)

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Phenome Force Demo: Find UFOs

A short workflow to demonstrate how to integrate code with PlantIT. Applies a threshold, dilates/closes, and finds contours of (U)nidentified (F)ruit (O)bjects in an image.

Usage

docker run -it -v $(pwd):/opt/find-ufos -w /opt/find-ufos wbonelli/find-ufos python3 find.py ufos <input file>

A file is provided for testing: data/tomatoes1.jpg

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A simple plant tissue segmentation workflow (for Phenome Force 2021)

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