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Add KEGG example data
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Update readme with links.
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willgryan committed May 14, 2024
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14 changes: 14 additions & 0 deletions R/data.R
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#'
#' @source <https://doi.org/10.1038/s41380-021-01205-y>
"gsea_example"

#' An example of KEGG results
#'
#' A wide data frame with enrichment scores (log10 FDR) from
#' MetaboAnalyst of one comparison.
#'
#' @format A data frame with 183 rows and 2 columns:
#' \describe{
#' \item{MAP}{KEGG Pathway IDS}
#' \item{MA}{Enrichment Scores of KEGG pathways}
#' }
#'
#' @source <https://doi.org/10.1101/2023.10.13.562226>
"kegg_example"
2 changes: 1 addition & 1 deletion README.Rmd
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## Usage

PAVER is designed to work with the output of pathway analysis tools. The package includes a vignette with an example dataset that explains it's functionality.
PAVER is designed to work with the output of pathway analysis tools. The package includes a vignette with an example dataset that explains it's functionality. The R Shiny application for the PAVER R package is hosted at [https://cdrl.shinyapps.io/PAVER/](https://cdrl.shinyapps.io/PAVER/). For more detailed information on PAVER and its functionalities, please refer to the article on the Cognitive Disorders Research Laboratory (CDRL) website [here](https://cdrl-ut.org/project/projects_and_posters/paver/).

## Contributing

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