Allow bootstrapping of make pipeline

.gitignore

@@ -145,3 +145,6 @@ hash.file
 # output files in tutorials folder
 tutorials/
 !tutorials/Oktoberfest Tutorial.ipynb
+
+# example data
+data/

Dockerfile

@@ -39,5 +39,8 @@ RUN ZIP=ThermoRawFileParser1.4.2.zip && \
 # Copy source folder
 ADD oktoberfest/ /root/oktoberfest
 
+# Copy make files into root folder to allow bootstrapping
+ADD Makefile* /root/
+
 # Used by ProteomicsDB runs to describe the oktoberfest version
 ADD hash.file /root/hash.file

Makefile

@@ -19,6 +19,9 @@ build: dependencies
 	git describe --long --dirty --always > hash.file
 	docker build -f Dockerfile -t $(IMAGE) . || (exit 1)
 
+bootstrap: DATA=/root/data
+bootstrap:
+	bash -c "cp /root/Makefile* $(LOCAL_DIR)"
 
 run_oktoberfest: rm_err_file
 	$(DOCKER_CMD) \