This respository contains scripts to analyse spatial patterns of tumor asscociatec macrophage distributions with respect to blood vessel location used for "Long-lived tumor-associated macrophages in glioma" by Petya B Georgieva, Thomas Mathivet, Silvanus Alt, Wolfgang Giese, Matteo Riva, Marly Balcer and Holger Gerhardt in Neuro-Oncology Advances (2020), see https://doi.org/10.1093/noajnl/vdaa127 .
Please edit the parameters_default.json. This file needs to be parsed to the corresponding python scripts via:
./extract_features.py -p PARAMETER_FILE
Please read the Wiki (https://github.com/wgiese/macrophage-analysis/wiki) for further info.