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vitessce · Oct 2, 2023 · d340050 · d340050
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diff --git a/pkgdown/_pkgdown.yml b/pkgdown/_pkgdown.yml
@@ -86,19 +86,13 @@ reference:
   desc: "Wrapper classes for automating the data conversion process for Vitessce."
 - contents:
   - AbstractWrapper
-  - SeuratWrapper
-  - SCEWrapper
-  - SPEWrapper
-  - GiottoWrapper
+  - AnnDataWrapper
+  - CsvWrapper
   - MultiImageWrapper
   - OmeTiffWrapper
+  - OmeZarrWrapper
 
 articles:
-  - title: Articles
-    navbar: Developer guides
-    contents:
-      - dev_wrapper_class
-      - dev_wrapper_subclass
   - title: Articles
     navbar: Troubleshooting
     contents:

diff --git a/vignettes/debugging.Rmd b/vignettes/debugging.Rmd
@@ -16,20 +16,9 @@ The following code snippets assume that `vitessceR` has been loaded via `library
 
 ```r
 library(vitessceR)
-vc <- VitessceConfig$new("My single-cell data visualization")
+vc <- VitessceConfig$new(schema_version = "1.0.16", name = "My single-cell data visualization")
 ```
 
-## Use the `out_dir` parameter for data object wrapper classes
-
-Rather than using a temporary directory, this will write converted files to the specified directory.
-This way, you can open and explore the converted output files.
-
-```r
-dir.create("./debug")
-
-dataset <- vc$add_dataset("My dataset")
-dataset <- dataset$add_object(SeuratWrapper$new(pbmc3k.final, out_dir = "./debug"))
-```
 
 ## Use the `port` parameter