feat: bump gnomAD to v4.1 (#93)

varfish-org · Jun 19, 2024 · ec9bf66 · ec9bf66
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diff --git a/download_urls.yml b/download_urls.yml
diff --git a/excerpt-data/00195a99f95af499/gnomad.genomes.v4.1.sites.chr18.vcf.bgz.tbi b/excerpt-data/00195a99f95af499/gnomad.genomes.v4.1.sites.chr18.vcf.bgz.tbi
diff --git a/excerpt-data/00195a99f95af499/url.txt b/excerpt-data/00195a99f95af499/url.txt
diff --git a/excerpt-data/01ad728b843bd350/gnomad.genomes.v4.1.sites.chr21.vcf.bgz.tbi b/excerpt-data/01ad728b843bd350/gnomad.genomes.v4.1.sites.chr21.vcf.bgz.tbi
diff --git a/excerpt-data/01ad728b843bd350/url.txt b/excerpt-data/01ad728b843bd350/url.txt
diff --git a/excerpt-data/02925a6d85534f5e/gnomad.genomes.v4.1.sites.chr22.vcf.bgz.tbi b/excerpt-data/02925a6d85534f5e/gnomad.genomes.v4.1.sites.chr22.vcf.bgz.tbi
diff --git a/excerpt-data/02925a6d85534f5e/url.txt b/excerpt-data/02925a6d85534f5e/url.txt
diff --git a/excerpt-data/037b7d26e11ce933/gnomad.genomes.v4.1.sites.chr7.vcf.bgz.tbi b/excerpt-data/037b7d26e11ce933/gnomad.genomes.v4.1.sites.chr7.vcf.bgz.tbi
diff --git a/excerpt-data/037b7d26e11ce933/url.txt b/excerpt-data/037b7d26e11ce933/url.txt
diff --git a/excerpt-data/083d8c815a387ec9/gnomad.exomes.v4.1.sites.chr21.vcf.bgz.tbi b/excerpt-data/083d8c815a387ec9/gnomad.exomes.v4.1.sites.chr21.vcf.bgz.tbi
diff --git a/excerpt-data/083d8c815a387ec9/url.txt b/excerpt-data/083d8c815a387ec9/url.txt
diff --git a/excerpt-data/0dc1ae9046a118fc/gnomad.exomes.v4.1.sites.chr16.vcf.bgz.tbi b/excerpt-data/0dc1ae9046a118fc/gnomad.exomes.v4.1.sites.chr16.vcf.bgz.tbi
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diff --git a/excerpt-data/0e156efe5d1b5f8a/gnomad.genomes.v4.1.sites.chr17.vcf.bgz.tbi b/excerpt-data/0e156efe5d1b5f8a/gnomad.genomes.v4.1.sites.chr17.vcf.bgz.tbi
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diff --git a/excerpt-data/0e2b15ea530544b9/gnomad.genomes.v4.1.sites.chr18.vcf.bgz b/excerpt-data/0e2b15ea530544b9/gnomad.genomes.v4.1.sites.chr18.vcf.bgz
diff --git a/excerpt-data/0e2b15ea530544b9/gnomad.genomes.v4.1.sites.chr18.vcf.bgz.tbi b/excerpt-data/0e2b15ea530544b9/gnomad.genomes.v4.1.sites.chr18.vcf.bgz.tbi
diff --git a/excerpt-data/0e2b15ea530544b9/url.txt b/excerpt-data/0e2b15ea530544b9/url.txt
diff --git a/excerpt-data/0f0569a060294ac6/gnomad.exomes.v4.1.sites.chr17.vcf.bgz.tbi b/excerpt-data/0f0569a060294ac6/gnomad.exomes.v4.1.sites.chr17.vcf.bgz.tbi
diff --git a/excerpt-data/0f0569a060294ac6/url.txt b/excerpt-data/0f0569a060294ac6/url.txt
diff --git a/excerpt-data/0fe47248887b2d28/gnomad.genomes.v4.1.sites.chr2.vcf.bgz.tbi b/excerpt-data/0fe47248887b2d28/gnomad.genomes.v4.1.sites.chr2.vcf.bgz.tbi
diff --git a/excerpt-data/0fe47248887b2d28/url.txt b/excerpt-data/0fe47248887b2d28/url.txt
diff --git a/excerpt-data/123806e2ab414e72/gnomad.genomes.v4.1.sites.chr6.vcf.bgz.tbi b/excerpt-data/123806e2ab414e72/gnomad.genomes.v4.1.sites.chr6.vcf.bgz.tbi
diff --git a/excerpt-data/123806e2ab414e72/url.txt b/excerpt-data/123806e2ab414e72/url.txt
diff --git a/excerpt-data/13be307bb1b4876b/gnomad.exomes.v4.1.sites.chr11.vcf.bgz b/excerpt-data/13be307bb1b4876b/gnomad.exomes.v4.1.sites.chr11.vcf.bgz
diff --git a/excerpt-data/13be307bb1b4876b/gnomad.exomes.v4.1.sites.chr11.vcf.bgz.tbi b/excerpt-data/13be307bb1b4876b/gnomad.exomes.v4.1.sites.chr11.vcf.bgz.tbi
diff --git a/excerpt-data/13be307bb1b4876b/url.txt b/excerpt-data/13be307bb1b4876b/url.txt
diff --git a/excerpt-data/1457b8d96332f2fc/gnomad.exomes.v4.1.sites.chr6.vcf.bgz.tbi b/excerpt-data/1457b8d96332f2fc/gnomad.exomes.v4.1.sites.chr6.vcf.bgz.tbi
diff --git a/excerpt-data/1457b8d96332f2fc/url.txt b/excerpt-data/1457b8d96332f2fc/url.txt
diff --git a/excerpt-data/1615213679df7351/gnomad.exomes.v4.1.sites.chr9.vcf.bgz b/excerpt-data/1615213679df7351/gnomad.exomes.v4.1.sites.chr9.vcf.bgz
diff --git a/excerpt-data/1615213679df7351/gnomad.exomes.v4.1.sites.chr9.vcf.bgz.tbi b/excerpt-data/1615213679df7351/gnomad.exomes.v4.1.sites.chr9.vcf.bgz.tbi
diff --git a/excerpt-data/1615213679df7351/url.txt b/excerpt-data/1615213679df7351/url.txt
diff --git a/excerpt-data/1a939255f24f54c7/gnomad.genomes.v4.1.sites.chr10.vcf.bgz.tbi b/excerpt-data/1a939255f24f54c7/gnomad.genomes.v4.1.sites.chr10.vcf.bgz.tbi
diff --git a/excerpt-data/1a939255f24f54c7/url.txt b/excerpt-data/1a939255f24f54c7/url.txt
diff --git a/excerpt-data/1b47fc4fca591e3b/gnomad.genomes.v4.1.sites.chr2.vcf.bgz b/excerpt-data/1b47fc4fca591e3b/gnomad.genomes.v4.1.sites.chr2.vcf.bgz
diff --git a/excerpt-data/1b47fc4fca591e3b/gnomad.genomes.v4.1.sites.chr2.vcf.bgz.tbi b/excerpt-data/1b47fc4fca591e3b/gnomad.genomes.v4.1.sites.chr2.vcf.bgz.tbi
diff --git a/excerpt-data/1b47fc4fca591e3b/url.txt b/excerpt-data/1b47fc4fca591e3b/url.txt
diff --git a/excerpt-data/1bfa09b5deb3fa10/gnomad.genomes.v4.1.sites.chr1.vcf.bgz b/excerpt-data/1bfa09b5deb3fa10/gnomad.genomes.v4.1.sites.chr1.vcf.bgz
diff --git a/excerpt-data/1bfa09b5deb3fa10/gnomad.genomes.v4.1.sites.chr1.vcf.bgz.tbi b/excerpt-data/1bfa09b5deb3fa10/gnomad.genomes.v4.1.sites.chr1.vcf.bgz.tbi
diff --git a/excerpt-data/1bfa09b5deb3fa10/url.txt b/excerpt-data/1bfa09b5deb3fa10/url.txt
diff --git a/excerpt-data/207cfeae46a469e2/gnomad.exomes.v4.1.sites.chr11.vcf.bgz.tbi b/excerpt-data/207cfeae46a469e2/gnomad.exomes.v4.1.sites.chr11.vcf.bgz.tbi
diff --git a/excerpt-data/207cfeae46a469e2/url.txt b/excerpt-data/207cfeae46a469e2/url.txt
diff --git a/excerpt-data/2090219412bcc207/gnomad.exomes.v4.1.sites.chr16.vcf.bgz b/excerpt-data/2090219412bcc207/gnomad.exomes.v4.1.sites.chr16.vcf.bgz
diff --git a/excerpt-data/2090219412bcc207/gnomad.exomes.v4.1.sites.chr16.vcf.bgz.tbi b/excerpt-data/2090219412bcc207/gnomad.exomes.v4.1.sites.chr16.vcf.bgz.tbi
diff --git a/excerpt-data/2090219412bcc207/url.txt b/excerpt-data/2090219412bcc207/url.txt
diff --git a/excerpt-data/20f2c71b46a41f2a/gnomad.v4.1.cnv.non_neuro_controls.vcf.gz b/excerpt-data/20f2c71b46a41f2a/gnomad.v4.1.cnv.non_neuro_controls.vcf.gz
diff --git a/excerpt-data/20f2c71b46a41f2a/url.txt b/excerpt-data/20f2c71b46a41f2a/url.txt
diff --git a/excerpt-data/25daa21c5e3240c8/gnomad.genomes.v4.1.sites.chr8.vcf.bgz b/excerpt-data/25daa21c5e3240c8/gnomad.genomes.v4.1.sites.chr8.vcf.bgz
diff --git a/excerpt-data/25daa21c5e3240c8/gnomad.genomes.v4.1.sites.chr8.vcf.bgz.tbi b/excerpt-data/25daa21c5e3240c8/gnomad.genomes.v4.1.sites.chr8.vcf.bgz.tbi
diff --git a/excerpt-data/25daa21c5e3240c8/url.txt b/excerpt-data/25daa21c5e3240c8/url.txt
diff --git a/excerpt-data/328f183e0b82314b/gnomad.genomes.v4.1.sites.chr14.vcf.bgz b/excerpt-data/328f183e0b82314b/gnomad.genomes.v4.1.sites.chr14.vcf.bgz
diff --git a/excerpt-data/328f183e0b82314b/gnomad.genomes.v4.1.sites.chr14.vcf.bgz.tbi b/excerpt-data/328f183e0b82314b/gnomad.genomes.v4.1.sites.chr14.vcf.bgz.tbi
diff --git a/excerpt-data/328f183e0b82314b/url.txt b/excerpt-data/328f183e0b82314b/url.txt
diff --git a/excerpt-data/345becf8459aa8c0/gnomad.exomes.v4.1.sites.chr18.vcf.bgz b/excerpt-data/345becf8459aa8c0/gnomad.exomes.v4.1.sites.chr18.vcf.bgz
diff --git a/excerpt-data/345becf8459aa8c0/gnomad.exomes.v4.1.sites.chr18.vcf.bgz.tbi b/excerpt-data/345becf8459aa8c0/gnomad.exomes.v4.1.sites.chr18.vcf.bgz.tbi
diff --git a/excerpt-data/345becf8459aa8c0/url.txt b/excerpt-data/345becf8459aa8c0/url.txt
diff --git a/excerpt-data/3a8b65f166db7b14/gnomad.genomes.v4.1.sites.chrX.vcf.bgz b/excerpt-data/3a8b65f166db7b14/gnomad.genomes.v4.1.sites.chrX.vcf.bgz
diff --git a/excerpt-data/3a8b65f166db7b14/gnomad.genomes.v4.1.sites.chrX.vcf.bgz.tbi b/excerpt-data/3a8b65f166db7b14/gnomad.genomes.v4.1.sites.chrX.vcf.bgz.tbi
diff --git a/excerpt-data/3a8b65f166db7b14/url.txt b/excerpt-data/3a8b65f166db7b14/url.txt
diff --git a/excerpt-data/3b00720bcd440003/gnomad.exomes.v4.1.sites.chr1.vcf.bgz b/excerpt-data/3b00720bcd440003/gnomad.exomes.v4.1.sites.chr1.vcf.bgz
diff --git a/excerpt-data/3b00720bcd440003/gnomad.exomes.v4.1.sites.chr1.vcf.bgz.tbi b/excerpt-data/3b00720bcd440003/gnomad.exomes.v4.1.sites.chr1.vcf.bgz.tbi
diff --git a/excerpt-data/3b00720bcd440003/url.txt b/excerpt-data/3b00720bcd440003/url.txt
diff --git a/excerpt-data/3bbcad25838889a9/gnomad.genomes.v4.1.sites.chr8.vcf.bgz.tbi b/excerpt-data/3bbcad25838889a9/gnomad.genomes.v4.1.sites.chr8.vcf.bgz.tbi
diff --git a/excerpt-data/3bbcad25838889a9/url.txt b/excerpt-data/3bbcad25838889a9/url.txt
diff --git a/excerpt-data/40e4cb1ee82f9deb/gnomad.exomes.v4.1.sites.chr14.vcf.bgz b/excerpt-data/40e4cb1ee82f9deb/gnomad.exomes.v4.1.sites.chr14.vcf.bgz
diff --git a/excerpt-data/40e4cb1ee82f9deb/gnomad.exomes.v4.1.sites.chr14.vcf.bgz.tbi b/excerpt-data/40e4cb1ee82f9deb/gnomad.exomes.v4.1.sites.chr14.vcf.bgz.tbi
diff --git a/excerpt-data/40e4cb1ee82f9deb/url.txt b/excerpt-data/40e4cb1ee82f9deb/url.txt
diff --git a/excerpt-data/418b9faa168c4d22/gnomad.v4.0.cnv.all.vcf.gz b/excerpt-data/418b9faa168c4d22/gnomad.v4.0.cnv.all.vcf.gz
diff --git a/excerpt-data/418b9faa168c4d22/url.txt b/excerpt-data/418b9faa168c4d22/url.txt
diff --git a/excerpt-data/42e467b833491732/gnomad.v4.1.constraint_metrics.tsv b/excerpt-data/42e467b833491732/gnomad.v4.1.constraint_metrics.tsv
diff --git a/excerpt-data/42e467b833491732/url.txt b/excerpt-data/42e467b833491732/url.txt
diff --git a/excerpt-data/43fa50242ee98d59/gnomad.genomes.v4.1.sites.chr14.vcf.bgz.tbi b/excerpt-data/43fa50242ee98d59/gnomad.genomes.v4.1.sites.chr14.vcf.bgz.tbi
diff --git a/excerpt-data/43fa50242ee98d59/url.txt b/excerpt-data/43fa50242ee98d59/url.txt
diff --git a/excerpt-data/4682b45610c01426/gnomad.exomes.v4.1.sites.chr10.vcf.bgz.tbi b/excerpt-data/4682b45610c01426/gnomad.exomes.v4.1.sites.chr10.vcf.bgz.tbi
diff --git a/excerpt-data/4682b45610c01426/url.txt b/excerpt-data/4682b45610c01426/url.txt
diff --git a/excerpt-data/4a7e5b2091d1666f/gnomad.exomes.v4.1.sites.chr17.vcf.bgz b/excerpt-data/4a7e5b2091d1666f/gnomad.exomes.v4.1.sites.chr17.vcf.bgz
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diff --git a/excerpt-data/4a7e5b2091d1666f/url.txt b/excerpt-data/4a7e5b2091d1666f/url.txt
diff --git a/excerpt-data/532de24b0974aeb1/gnomad.exomes.v4.1.sites.chr21.vcf.bgz b/excerpt-data/532de24b0974aeb1/gnomad.exomes.v4.1.sites.chr21.vcf.bgz
diff --git a/excerpt-data/532de24b0974aeb1/gnomad.exomes.v4.1.sites.chr21.vcf.bgz.tbi b/excerpt-data/532de24b0974aeb1/gnomad.exomes.v4.1.sites.chr21.vcf.bgz.tbi
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diff --git a/excerpt-data/54e86234a3a47e43/gnomad.genomes.v4.1.sites.chr10.vcf.bgz b/excerpt-data/54e86234a3a47e43/gnomad.genomes.v4.1.sites.chr10.vcf.bgz
diff --git a/excerpt-data/54e86234a3a47e43/gnomad.genomes.v4.1.sites.chr10.vcf.bgz.tbi b/excerpt-data/54e86234a3a47e43/gnomad.genomes.v4.1.sites.chr10.vcf.bgz.tbi
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diff --git a/excerpt-data/57b81e8761919245/gnomad.exomes.v4.1.sites.chr19.vcf.bgz.tbi b/excerpt-data/57b81e8761919245/gnomad.exomes.v4.1.sites.chr19.vcf.bgz.tbi
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diff --git a/excerpt-data/57b95d681d0e9864/gnomad.exomes.v4.1.sites.chr4.vcf.bgz.tbi b/excerpt-data/57b95d681d0e9864/gnomad.exomes.v4.1.sites.chr4.vcf.bgz.tbi
diff --git a/excerpt-data/57b95d681d0e9864/url.txt b/excerpt-data/57b95d681d0e9864/url.txt
diff --git a/excerpt-data/5875be3468d6f69a/gnomad.genomes.v4.1.sites.chr3.vcf.bgz.tbi b/excerpt-data/5875be3468d6f69a/gnomad.genomes.v4.1.sites.chr3.vcf.bgz.tbi
diff --git a/excerpt-data/5875be3468d6f69a/url.txt b/excerpt-data/5875be3468d6f69a/url.txt
diff --git a/excerpt-data/58d3599d2c8b6c3d/gnomad.v4.0.constraint_metrics.tsv b/excerpt-data/58d3599d2c8b6c3d/gnomad.v4.0.constraint_metrics.tsv
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diff --git a/excerpt-data/5a4e71a2b7b4c240/gnomad.genomes.v4.1.sites.chr19.vcf.bgz b/excerpt-data/5a4e71a2b7b4c240/gnomad.genomes.v4.1.sites.chr19.vcf.bgz
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diff --git a/excerpt-data/5b6378cea55ed29d/gnomad.genomes.v4.1.sites.chrX.vcf.bgz.tbi b/excerpt-data/5b6378cea55ed29d/gnomad.genomes.v4.1.sites.chrX.vcf.bgz.tbi
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diff --git a/excerpt-data/5b8e06a043afd8bd/gnomad.genomes.v4.1.sites.chr16.vcf.bgz b/excerpt-data/5b8e06a043afd8bd/gnomad.genomes.v4.1.sites.chr16.vcf.bgz
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diff --git a/excerpt-data/5c9b2a106183a922/gnomad.exomes.v4.1.sites.chr2.vcf.bgz b/excerpt-data/5c9b2a106183a922/gnomad.exomes.v4.1.sites.chr2.vcf.bgz