[0.3.8]

Fixed

• missing data_range specification in structural_similarity call

[0.3.7]

Added

• Functions for converting chess extract feature positions into genome coordinates, thanks to @cmdoret

Fixed

• Version number reporting was not working correctly

[0.3.6]

Fixed

• All NaN results in chess sim runs on cooler files, fixed through fanc 0.9.9.
• Cooler file loading time via fanc, significant speed up in fanc 0.9.8

Changed

• Switch to matplotlib 'pdf' backend

[0.3.5]

Added

• Raise error if too small (<20 bins) regions are used in chess sim before running comparisons.

[0.3.4]

Fixed

• "ValueError: Image must contain only positive values" in chess extract

[0.3.3]

Added

• Explicit error for zero valid pairs in the pairs bed input for chess sim
• Update requirements to latest pandas and fanc versions

[0.3.2]

Added

• Output directory checks in chess extract and chess crosscorrelate

Removed

• chess filter

[0.3.1]

Added

• Check whether output directories exist before running any computations.
• Allow paths to output files without basenames.

v0.3.0

[0.3.0]

Added

• --window-size, --sigma-spatial, --size-medianfilter and --closing-square optional parameters for more control in the feature extraction.
• Accept data in FANC, Juicer and Cooler formats (.hic, .cool, .mcool)
• Raise a warning message if the pairs file contains chromosomes that are not specified in the provided contact data.

Fixed

• chess pairs: Fix error on empty lines in chromosome sizes file.
• chess pairs: Catch OSError raised by pybedtools when the provided path is not recognized as a UCSC genome id.

Resubmission

All features ready for public usage. Potentially with bugs.